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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cerebral microangiopathy COL4A1-related disorder
1 gene
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1 of 1 corroborated by 2+ sources
COL4A1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 154 →
Cerebroretinal microangiopathy with calcifications and cysts Congenital chromosomal disease
1 gene
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1 of 1 corroborated by 2+ sources
POT1(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Cerebrovascular trauma Coronary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PHACTR1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Cervical lymphadenopathy Middle aortic syndrome
1 gene
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NF1(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 77 →
Cervical lymphadenopathy Neurofibromatosis
1 gene
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1 of 1 corroborated by 2+ sources
NF1(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 77 →
Charcot-Marie-Tooth disease axonal type 2F Genetic peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
HSPB1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 206 →
Charcot-Marie-Tooth disease axonal type 2Z Developmental delay with impaired growth and dysmorphic facies
1 gene
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1 of 1 corroborated by 2+ sources
MORC2(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Charcot-Marie-Tooth disease type 2A1 Congenital hemihypertrophy
1 gene
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1 of 1 corroborated by 2+ sources
KIF1B(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 44 →
Charcot-Marie-Tooth disease type 2T Cryopyrin-associated periodic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MME(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Charcot-Marie-Tooth disease type 4C Congenital hemihypertrophy
1 gene
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1 of 1 corroborated by 2+ sources
SH3TC2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 44 →
CHEK2-related cancer predisposition Male breast neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
CHEK2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Camptocormia Childhood myocerebrohepatopathy spectrum
1 gene
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POLG(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Chromophobe renal cell carcinoma Clear cell papillary renal cell carcinoma
1 gene
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HNF1A(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Chromosome 17q23.1-q23.2 deletion syndrome Paroxysmal dystonic choreoathetosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC2A1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Chromosome xq28 duplication syndrome Neonatal encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
MECP2(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Chromosome xq28 duplication syndrome Early-onset parkinsonism-intellectual disability syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAB39B(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Chromosome xq28 duplication syndrome Parkinsonism with cognitive impairment
1 gene
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1 of 1 corroborated by 2+ sources
RAB39B(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Chromosome xq28 duplication syndrome Waisman syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAB39B(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Chronic infantile diarrhea due to guanylate cyclase 2c overactivity Congenital secretory diarrhea
1 gene
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1 of 1 corroborated by 2+ sources
GUCY2C(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 172 →
Chronic pain Congenital pain insensitivity
1 gene
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1 of 1 corroborated by 2+ sources
SCN9A(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 164 →
Chronic pain Paroxysmal extreme pain disorder
1 gene
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1 of 1 corroborated by 2+ sources
SCN9A(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 164 →
Chronobiology disorder Urinary bladder calculi
1 gene
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1 of 1 corroborated by 2+ sources
AHR(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 191 →
Chronobiology disorder Patent ductus venosus
1 gene
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1 of 1 corroborated by 2+ sources
AHR(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 191 →
Chronobiology disorder Ureteral neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
AHR(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 191 →
Chuvash erythrocytosis Von hippel-lindau syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VHL(8)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 385 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.