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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
mucopolysaccharidosis type 1 Pfaundler-hurler syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IDUA(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 296 →
Multicystic dysplastic kidney Renal cysts and diabetes syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(7)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 23 →
Multiminicore myopathy Myosin storage myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 89 →
Biventricular noncompaction cardiomyopathy Multiminicore myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 89 →
Multiminicore myopathy MYH7-related skeletal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 89 →
dilated cardiomyopathy 1S Multiminicore myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 89 →
Multiminicore myopathy Progressive contractures limb-girdle weakness muscle dystrophy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TTN(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
multiple endocrine neoplasia type 1 Vipoma
1 gene
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1 of 1 corroborated by 2+ sources
MEN1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Kenny-caffey syndrome muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11
1 gene
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1 of 1 corroborated by 2+ sources
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 108 →
11p11.2 deletion syndrome Frontonasal dysplasia with alopecia and genital anomaly
1 gene
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1 of 1 corroborated by 2+ sources
ALX4(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 93 →
11p11.2 deletion syndrome Seizures, scoliosis, and macrocephaly/microcephaly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EXT2(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 93 →
11p11.2 deletion syndrome exostoses, multiple, type 2
1 gene
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1 of 1 corroborated by 2+ sources
EXT2(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 93 →
11p11.2 deletion syndrome Intellectual developmental disorder behavioral dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
PHF21A(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 93 →
14q11.2 microduplication syndrome Chromodomain helicase dna binding protein 8 overgrowth syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHD8(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 279 →
14q11.2 microduplication syndrome FOXG1 disorder
1 gene
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1 of 1 corroborated by 2+ sources
FOXG1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 279 →
17,20-lyase deficiency Malignant hypertension
1 gene
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1 of 1 corroborated by 2+ sources
CYP17A1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
17q21.31 microdeletion syndrome Chromosome 17q21.31 deletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KANSL1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
1p31p32 microdeletion syndrome Brain malformations
1 gene
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1 of 1 corroborated by 2+ sources
NFIA(7)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
3-hydroxyisobutyryl-coa hydrolase deficiency Beta-hydroxyisobutyryl-coa deacylase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HIBCH(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
46, xy disorder of sex development NR5A1-related sex development disorder
1 gene
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1 of 1 corroborated by 2+ sources
NR5A1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 38 →
Aapoai amyloidosis Ataxia with vitamin e deficiency
1 gene
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1 of 1 corroborated by 2+ sources
APOA1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
ABCA4-related retinopathy Bietti crystalline corneoretinal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
ABCA4(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Abeta amyloidosis Amyloid neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
APP(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 116 →
Aceruloplasminemia Ferroxidase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CP(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 231 →
Achondrogenesis TRIP11-related skeletal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
TRIP11(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 183 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.