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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Branchial cleft anomalies Vissers-bodmer syndrome
1 gene
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KMT2D(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 144 →
Bresek syndrome Congenital palmoplantar and perioral keratoderma of olmsted
1 gene
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1 of 1 corroborated by 2+ sources
MBTPS2(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 332 →
Brown tendon sheath syndrome Whispering dysphonia
1 gene
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1 of 1 corroborated by 2+ sources
TUBB4A(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Brown tendon sheath syndrome TUBB4A-related neurologic disorder
1 gene
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1 of 1 corroborated by 2+ sources
TUBB4A(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Brown tendon sheath syndrome Osteolysis, hereditary, of carpal bones with or without nephropathy
1 gene
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MAFB(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Bruck syndrome ehlers-danlos syndrome, cardiac valvular type
1 gene
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1 of 1 corroborated by 2+ sources
COL1A2(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Bruck syndrome COL1A2-related Ehlers-Danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL1A2(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Bruck syndrome COL1A2-related osteogenesis imperfecta
1 gene
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1 of 1 corroborated by 2+ sources
COL1A2(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Bruxism CDKL5 disorder
1 gene
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1 of 1 corroborated by 2+ sources
CDKL5(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 61 →
Bruxism Central apnea
1 gene
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MECP2(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 61 →
Bruxism Neonatal encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
MECP2(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 61 →
Bulbar palsy Central apnea
1 gene
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MECP2(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 61 →
Bulbar palsy Neonatal encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
MECP2(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 61 →
Burnett schwartz berberian syndrome Keratosis follicularis spinulosa decalvans
1 gene
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1 of 1 corroborated by 2+ sources
LRP1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 194 →
C1q deficiency systemic lupus erythematosus related to C1QA
1 gene
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1 of 1 corroborated by 2+ sources
C1QA(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Café-au-lait macules Schwannomatosis
1 gene
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1 of 1 corroborated by 2+ sources
LZTR1(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cancer, alopecia, pigment dyscrasia, onychodystrophy, and keratoderma Dyschromatosis symmetrica hereditaria
1 gene
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1 of 1 corroborated by 2+ sources
SASH1(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cap myopathy MYPN-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYPN(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cap myopathy dilated cardiomyopathy 1KK
1 gene
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1 of 1 corroborated by 2+ sources
MYPN(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cap myopathy TPM2-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TPM2(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cap myopathy Congenital generalized hypercontractile muscle stiffness syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TPM3(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cap myopathy TPM3-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TPM3(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Capillary infantile hemangioma Growth retardation, alopecia, pseudoanodontia and optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
ANTXR1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Capillary infantile hemangioma gapo syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANTXR1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Capillary infantile hemangioma congenital heart defects, multiple types, 7
1 gene
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1 of 1 corroborated by 2+ sources
FLT4(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.