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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cerebral thrombosis hereditary von Willebrand disease
1 gene
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1 of 1 corroborated by 2+ sources
VWF(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 266 →
Cerebral venous sinus thrombosis quebec platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLAU(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cerebral venous sinus thrombosis Congenital factor v deficiency
1 gene
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1 of 1 corroborated by 2+ sources
F5(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 37 →
Cerebral venous sinus thrombosis East texas bleeding disorder
1 gene
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1 of 1 corroborated by 2+ sources
F5(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 37 →
Cerebral venous sinus thrombosis thrombophilia due to activated protein c resistance
1 gene
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1 of 1 corroborated by 2+ sources
F5(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 37 →
Cerebral venous sinus thrombosis protein S deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PROS1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 37 →
Cerebrofaciothoracic dysplasia Craniofacial dysmorphism skeletal anomalies intellectual disability syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TMCO1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 398 →
Chilblain lupus Type i interferonopathy
1 gene
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1 of 1 corroborated by 2+ sources
TREX1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 150 →
Chilblain lupus retinal vasculopathy with cerebral leukoencephalopathy and systemic manifestations
1 gene
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1 of 1 corroborated by 2+ sources
TREX1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 150 →
Childhood myocerebrohepatopathy spectrum Neonatal convulsions
1 gene
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POLG(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 97 →
Childhood myocerebrohepatopathy spectrum Mitochondrial hepatopathy
1 gene
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POLG(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 97 →
Cholestasis Osteootohepatoenteric syndrome
1 gene
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1 of 1 corroborated by 2+ sources
UNC45A(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Chondrocalcinosis Eye pain
1 gene
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1 of 1 corroborated by 2+ sources
POMC(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Chondrocalcinosis Rhabdomyoma
1 gene
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1 of 1 corroborated by 2+ sources
POMC(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Chondrocalcinosis Sacroiliitis
1 gene
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1 of 1 corroborated by 2+ sources
POMC(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Chorioretinopathy with microcephaly microcephaly and chorioretinopathy 1
1 gene
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1 of 1 corroborated by 2+ sources
TUBGCP6(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Choroideremia-deafness-obesity syndrome Deafness, nonsyndromic sensorineural, mitochondrial
1 gene
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1 of 1 corroborated by 2+ sources
POU3F4(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 251 →
Choroideremia-deafness-obesity syndrome Hearing loss with stapes fixation
1 gene
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1 of 1 corroborated by 2+ sources
POU3F4(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Chromosome 12p deletion syndrome Urethral disease
1 gene
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1 of 1 corroborated by 2+ sources
ERC1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Chromosome 17q21.31 deletion syndrome koolen-de vries syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KANSL1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Chromosome 17q21.31 deletion syndrome Conjunctival telangiectasis
1 gene
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ATM(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 348 →
Chromosome 22q11.2 microduplication syndrome Shprintzen-goldberg syndrome
1 gene
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TBX1(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Chromosome 3p25 monosomy Creatine phosphokinase elevation
1 gene
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1 of 1 corroborated by 2+ sources
CAV3(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 217 →
Chromosome xq21 deletion syndrome Deafness, nonsyndromic sensorineural, mitochondrial
1 gene
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POU3F4(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 251 →
Chromosome xq21 deletion syndrome Hearing loss with stapes fixation
1 gene
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1 of 1 corroborated by 2+ sources
POU3F4(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.