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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Alpha thalassemia HBA1-related alpha thalassemia spectrum
1 gene
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1 of 1 corroborated by 2+ sources
HBA1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 72 →
HBA1-related alpha thalassemia spectrum Hemoglobin barts fetalis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HBA1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 72 →
HBA1-related alpha thalassemia spectrum Hemoglobin h disease
1 gene
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1 of 1 corroborated by 2+ sources
HBA1(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 72 →
Alpha thalassemia HBA2-related alpha thalassemia spectrum
1 gene
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1 of 1 corroborated by 2+ sources
HBA2(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 72 →
HBA2-related alpha thalassemia spectrum Hemoglobin barts fetalis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HBA2(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 72 →
HBA2-related alpha thalassemia spectrum Hemoglobin h disease
1 gene
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1 of 1 corroborated by 2+ sources
HBA2(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 72 →
Benign mucous membrane pemphigoid with ocular involvement Heerfordt syndrome
1 gene
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0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 1 →
Bouillaud’s disease Heerfordt syndrome
1 gene
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0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Heerfordt syndrome
1 gene
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0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 1 →
Cardiac tamponade Hematoma
1 gene
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1 of 1 corroborated by 2+ sources
PLAT(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cooleys anemia Hemoglobin f disease
1 gene
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HBB(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 19 →
Dominant beta-thalassemia Hemoglobin f disease
1 gene
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1 of 1 corroborated by 2+ sources
HBB(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 19 →
Hemoglobin c disease Hemoglobin f disease
1 gene
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1 of 1 corroborated by 2+ sources
HBB(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 19 →
Hemoglobin f disease Hemoglobinopathy toms river
1 gene
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1 of 1 corroborated by 2+ sources
HBG2(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 19 →
Hemophilia b carriers Warfarin sensitivity
1 gene
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1 of 1 corroborated by 2+ sources
F9(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Hepatic methionine adenosyltransferase deficiency hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase
1 gene
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1 of 1 corroborated by 2+ sources
AHCY(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 83 →
Hepatic methionine adenosyltransferase deficiency methionine adenosyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MAT1A(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 83 →
Hepatic vein thrombosis Microvascular angina
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Hepatic vein thrombosis homocystinuria due to methylene tetrahydrofolate reductase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Congenital factor v deficiency Hepatic vein thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
F5(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 37 →
East texas bleeding disorder Hepatic vein thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
F5(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 37 →
Hereditary arginine vasopressin deficiency Shy-drager syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AVP(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
hereditary breast carcinoma microcephaly with intellectual disability
1 gene
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MCPH1(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Episodic kinesigenic dyskinesia Hereditary continuous muscle fiber activity
1 gene
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1 of 1 corroborated by 2+ sources
KCNA1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 58 →
Episodic pain syndrome hereditary sensory and autonomic neuropathy type 7
1 gene
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1 of 1 corroborated by 2+ sources
SCN11A(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 164 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.