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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Early-onset progressive diffuse brain atrophy-microcephaly-muscle weakness-optic atrophy syndrome Early-onset progressive encephalopathy-spastic ataxia-distal spinal muscular atrophy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBCE(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 108 →
Early-onset progressive diffuse brain atrophy-microcephaly-muscle weakness-optic atrophy syndrome Sanjad-sakati syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBCE(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 108 →
Early-onset progressive diffuse brain atrophy-microcephaly-muscle weakness-optic atrophy syndrome encephalopathy, progressive, with amyotrophy and optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
TBCE(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 108 →
Early-onset progressive encephalopathy-spastic ataxia-distal spinal muscular atrophy syndrome Kenny-caffey syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBCE(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 108 →
East texas bleeding disorder Venous hypertension
1 gene
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1 of 1 corroborated by 2+ sources
F5(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 37 →
Congenital pectus carinatum Ectopia lentis
1 gene
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1 of 1 corroborated by 2+ sources
FBN1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 52 →
Coronary artery dissection Ectopia lentis
1 gene
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1 of 1 corroborated by 2+ sources
FBN1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 52 →
Eichsfeld type congenital muscular dystrophy Zebra body myopathy
1 gene
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1 of 1 corroborated by 2+ sources
ACTA1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Eichsfeld type congenital muscular dystrophy SELENON-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
SELENON(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Encephalitis X-linked cerebral adrenoleukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
ABCD1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
encephalopathy, progressive, with amyotrophy and optic atrophy Kenny-caffey syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBCE(7)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 108 →
Epidermolytic palmoplantar keratoderma Keratosis of greither
1 gene
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1 of 1 corroborated by 2+ sources
KRT1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 230 →
Colchicine resistance Orthostatic hypotension
1 gene
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1 of 1 corroborated by 2+ sources
ABCB1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 57 →
Cold-induced sweating syndrome Perching syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KLHL7(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 331 →
collagen 6-related myopathy dystonia 27
1 gene
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COL6A3(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 393 →
Collagen vi muscular dystrophy dystonia 27
1 gene
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1 of 1 corroborated by 2+ sources
COL6A3(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 393 →
Bouillaud’s disease Collagenous colitis
1 gene
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1 of 1 corroborated by 2+ sources
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 1 →
Collagenous colitis Skeletal system disease
1 gene
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0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 1 →
Collagenous colitis Wheat allergic reaction
1 gene
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0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 1 →
Combined deficiency of sialidase and beta galactosidase Galactosialidosis
1 gene
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1 of 1 corroborated by 2+ sources
CTSA(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
combined immunodeficiency due to DOCK8 deficiency Insulin dependent diabetes mellitus secretory diarrhea syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DOCK8(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Combined immunodeficiency with granulomatosis recombinase activating gene 1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
RAG1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 173 →
Combined immunodeficiency with granulomatosis recombinase activating gene 2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
RAG2(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 173 →
Combined immunodeficiency, enteropathy spectrum Multiple intestinal atresia
1 gene
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1 of 1 corroborated by 2+ sources
TTC7A(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 267 →
Combined oxidative phosphorylation defect Parkinsonism-dystonia
1 gene
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1 of 1 corroborated by 2+ sources
WARS2(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 392 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.