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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Alopecia universalis Atrichia with papular lesions
1 gene
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1 of 1 corroborated by 2+ sources
HR(6)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Alopecia-intellectual disability syndrome Amr syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AHSG(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 362 →
Alopecia-intellectual disability syndrome Palmoplantar keratoderma and congenital alopecia
1 gene
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1 of 1 corroborated by 2+ sources
LSS(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 362 →
Alopecia-intellectual disability syndrome Cataract-alopecia-sclerodactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LSS(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 362 →
Alpha thalassemia x-linked intellectual disability Intellectual developmental disorder hypotonic x-linked
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 122 →
ALPL-related autosomal dominant hypophosphatasia Childhood hypophosphatasia
1 gene
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1 of 1 corroborated by 2+ sources
ALPL(5)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 363 →
ALPL-related autosomal recessive hypophosphatasia Childhood hypophosphatasia
1 gene
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1 of 1 corroborated by 2+ sources
ALPL(5)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 363 →
Alternating hemiplegia of childhood fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A2(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Alternating hemiplegia of childhood hemiplegic migraine-developmental and epileptic encephalopathy spectrum
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A2(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Alternating hemiplegia of childhood Capos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A3(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 238 →
Alternating hemiplegia of childhood Cerebellar ataxia, areflexia, pes cavus, optic atrophy, and sensorineural hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A3(5)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 238 →
Alternating hemiplegia of childhood ATP1A3-associated neurological disorder
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A3(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 238 →
Amegakaryocytic thrombocytopenia Thrombocythemia with distal limb defects
1 gene
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1 of 1 corroborated by 2+ sources
THPO(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 53 →
Amelia Patellar aplasia
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 24 →
Ameloblastoma Hairy cell leukemia
1 gene
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1 of 1 corroborated by 2+ sources
BRAF(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Ameloblastoma Congenital hypothalamic hamartoma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMO(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 292 →
Ameloblastoma Curry-jones syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMO(5)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 292 →
Ameloblastoma Winter shortland temple syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMO(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 292 →
Ameloblastoma mosaic SMO syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMO(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 292 →
Aminoglycoside-induced deafness Infantile liver failure
1 gene
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1 of 1 corroborated by 2+ sources
TRMU(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Amish infantile epilepsy syndrome spinocerebellar ataxia type 2
1 gene
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1 of 1 corroborated by 2+ sources
ATXN2(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Amish infantile epilepsy syndrome Salt and pepper developmental regression syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL5(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Amish infantile epilepsy syndrome GM3 synthase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL5(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Amish lethal microcephaly Thiamine metabolism dysfunction syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Amyloid polyneuropathy Apolipoprotein a-i amyloidosis
1 gene
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APOA1(1)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.