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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hemoglobin c beta thalassemia Thalassemia intermedia
1 gene
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1 of 1 corroborated by 2+ sources
HBB(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 19 →
Hemoglobin d disease Thalassemia intermedia
1 gene
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1 of 1 corroborated by 2+ sources
HBB(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 19 →
tibial muscular dystrophy TTN-related myopathy, dominant-negative TTNsv
1 gene
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TTN(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 221 →
tooth agenesis, selective, 1 Tooth and nail syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MSX1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 159 →
tooth agenesis, selective, 1 Witkop syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MSX1(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 159 →
Tooth and nail syndrome Witkop syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MSX1(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 159 →
Transthyretin amyloid cardiomyopathy Wild-type transthyretin-related amyloidosis
1 gene
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TTR(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 182 →
Progressive contractures limb-girdle weakness muscle dystrophy syndrome TTN-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TTN(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 221 →
Early-onset myopathy with fatal cardiomyopathy TTN-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TTN(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 221 →
myopathy, myofibrillar, 9, with early respiratory failure TTN-related myopathy
1 gene
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TTN(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 221 →
tibial muscular dystrophy TTN-related myopathy
1 gene
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TTN(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 221 →
dilated cardiomyopathy 1G TTN-related myopathy
1 gene
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TTN(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 221 →
TUBB4A-related neurologic disorder Whispering dysphonia
1 gene
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1 of 1 corroborated by 2+ sources
TUBB4A(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Ureteral neoplasms Urinary bladder calculi
1 gene
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1 of 1 corroborated by 2+ sources
AHR(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 191 →
Uruguay faciocardio-musculoskeletal syndrome X-linked scapuloperoneal muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
FHL1(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 415 →
Van esch-o’driscoll syndrome X-linked reticulate pigmentary disorder
1 gene
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1 of 1 corroborated by 2+ sources
POLA1(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Waardenburg syndrome type 4C Yemenite deaf-blind hypopigmentation syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX10(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Wieacker syndrome Wieacker-wolff syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZC4H2(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
X-linked agammaglobulinemia X-linked hypogammaglobulinemia
1 gene
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1 of 1 corroborated by 2+ sources
BTK(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
X-linked cerebral cerebellar coloboma syndrome X-linked optic atrophy
1 gene
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WDR45(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 391 →
X-linked complicated corpus callosum dysgenesis X-linked complicated spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
L1CAM(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 274 →
X-linked complicated corpus callosum dysgenesis X-linked hydrocephalus with stenosis of the aqueduct of sylvius
1 gene
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1 of 1 corroborated by 2+ sources
L1CAM(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 274 →
X-linked complicated spastic paraplegia X-linked hydrocephalus with stenosis of the aqueduct of sylvius
1 gene
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1 of 1 corroborated by 2+ sources
L1CAM(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 274 →
X-linked dominant hypophosphatemic rickets X-linked hypophosphatemia
1 gene
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1 of 1 corroborated by 2+ sources
PHEX(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
X-linked ehlers-danlos syndrome X-linked keloid scarring syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FLNA(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 62 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.