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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Bouillaud’s disease Cryoglobulinemia
2 genes
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2 of 2 corroborated by 2+ sources
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 1 →
Cryoglobulinemia Skeletal system disease
2 genes
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0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 1 →
Cryoglobulinemia Wheat allergic reaction
2 genes
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0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 1 →
Bouillaud’s disease Cervical intraepithelial neoplasia
2 genes
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2 of 2 corroborated by 2+ sources
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 1 →
Benign adult familial myoclonic epilepsy Benign myoclonic epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
ADRA2B(2), SAMD12(3)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 357 →
Familial polycythemia Thrombocythemia
2 genes
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2 of 2 corroborated by 2+ sources
SH2B3(3), JAK2(4)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. —
Familial polycythemia Thrombocytosis
2 genes
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2 of 2 corroborated by 2+ sources
SH2B3(3), JAK2(4)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. —
Congenital erythropoietic porphyria Porphyria
2 genes
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2 of 2 corroborated by 2+ sources
GATA1(2), UROS(4)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 125 →
Cutaneous porphyria Porphyria
2 genes
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2 of 2 corroborated by 2+ sources
GATA1(2), UROS(6)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 125 →
Endometrial hyperplasia Vulvar lichen sclerosus
2 genes
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2 of 2 corroborated by 2+ sources
TP53(2), CDKN2A(2)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 3 →
Congenital hypoplastic anemia Spherocytosis
2 genes
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2 of 2 corroborated by 2+ sources
CAD(2), UMPS(2)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 168 →
Brain edema Cholesterol embolism
2 genes
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2 of 2 corroborated by 2+ sources
PLAU(2), PLAT(2)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 123 →
Brain edema Intracranial embolism and thrombosis
2 genes
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2 of 2 corroborated by 2+ sources
PLAU(2), PLAT(2)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 123 →
Tongue cancer Tongue neoplasms
2 genes
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TERT(1), HLA-DQB1(1)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. —
Head and neck cancer Tongue cancer
2 genes
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TERT(1), HLA-DQB1(1)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 1 →
Hypoplastic anemia Spherocytosis
2 genes
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CAD(1), UMPS(1)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 168 →
Cataract-intellectual disability-hypogonadism syndrome Martsolf syndrome
2 genes
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2 of 2 corroborated by 2+ sources
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 48 →
Annular epidermolytic ichthyosis Keratosis
2 genes
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2 of 2 corroborated by 2+ sources
KRT1(4), KRT10(4)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 230 →
Epidermolytic ichthyosis Keratosis
2 genes
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2 of 2 corroborated by 2+ sources
KRT1(6), KRT10(7)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 230 →
Congenital reticular ichthyosiform erythroderma Keratosis
2 genes
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2 of 2 corroborated by 2+ sources
KRT1(4), KRT10(5)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 230 →
Leiomyoma X-linked diffuse leiomyomatosis with alport syndrome
2 genes
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2 of 2 corroborated by 2+ sources
COL4A5(2), COL4A6(2)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 49 →
Combined cellular and humoral immune defects with granulomas Omenn syndrome
2 genes
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2 of 2 corroborated by 2+ sources
RAG1(5), RAG2(5)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 173 →
Combined immunodeficiency with skin granulomas Omenn syndrome
2 genes
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2 of 2 corroborated by 2+ sources
RAG1(5), RAG2(5)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 173 →
Cowchock syndrome Deafness, x-linked
2 genes
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1 of 2 corroborated by 2+ sources
AIFM1(4), RAB33A(1)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. —
Deafness, x-linked Senter syndrome
2 genes
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2 of 2 corroborated by 2+ sources
GJB6(2), GJB2(2)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 210 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.