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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Degenerative disorder Neurodegenerative disease
40 genes
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38 of 40 corroborated by 2+ sources
APP(2), PSEN1(2), SERPINA1(2), MAPT(2), EPO(2), GSTO1(2), HMOX1(2), NGFR(2), SNCA(2), SOD2(2), IL6(2), NGF(2) +28 more
0.909 1.000 2.66e-116 1.27e-114 ✓ sig. —
Learning disorders Neurodegenerative disease
5 genes
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5 of 5 corroborated by 2+ sources
APP(2), PSEN1(2), MAPT(2), HMOX1(2), APOD(2)
0.067 0.139 4.59e-8 3.39e-7 ✓ sig. —
Neurodegeneration with brain iron accumulation Neurodegenerative disease
3 genes
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3 of 3 corroborated by 2+ sources
FTL(4), PANK2(4), FTH1(6)
0.055 0.214 7.10e-6 3.89e-5 ✓ sig. —
Amnesia Neurodegenerative disease
3 genes
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3 of 3 corroborated by 2+ sources
APP(2), IL6(2), NGF(2)
0.051 0.167 1.58e-5 8.37e-5 ✓ sig. —
Neurodegenerative disease Splenomegaly
3 genes
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3 of 3 corroborated by 2+ sources
APP(2), PSEN1(2), MAPT(2)
0.049 0.150 2.20e-5 1.15e-4 ✓ sig. —
Amyotrophic lateral sclerosis, susceptibility to, 25 Genetic neurodegenerative disease
1 gene
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1 of 1 corroborated by 2+ sources
KIF5A(3)
0.250 1.000 1.94e-4 4.41e-4 ✓ sig. Cluster 544 →
Genetic neurodegenerative disease Neurodegeneration, infantile-onset, with optic atrophy and brain abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
BORCS8(2)
0.250 1.000 1.94e-4 4.41e-4 ✓ sig. —
Genetic neurodegenerative disease Neurodegeneration, infantile-onset, biotin-responsive
1 gene
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1 of 1 corroborated by 2+ sources
SLC5A6(2)
0.250 1.000 1.94e-4 4.41e-4 ✓ sig. —
Genetic neurodegenerative disease Peripheral motor neuropathy, childhood-onset, biotin-responsive
1 gene
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1 of 1 corroborated by 2+ sources
SLC5A6(2)
0.250 1.000 1.94e-4 4.41e-4 ✓ sig. —
Genetic neurodegenerative disease Spastic paraplegia 10, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
KIF5A(2)
0.250 1.000 1.94e-4 4.41e-4 ✓ sig. Cluster 544 →
Genetic neurodegenerative disease Severe neonatal myoclonus
1 gene
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1 of 1 corroborated by 2+ sources
KIF5A(2)
0.250 1.000 1.94e-4 4.41e-4 ✓ sig. Cluster 544 →
Genetic neurodegenerative disease Inherited neurodegenerative disorder
1 gene
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1 of 1 corroborated by 2+ sources
KIF5A(2)
0.250 1.000 1.94e-4 4.41e-4 ✓ sig. Cluster 544 →
Early-infantile neurological disorder with severe intellectual disability, hypotonia and congenital heart disease Genetic neurodegenerative disease
1 gene
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1 of 1 corroborated by 2+ sources
BORCS8(2)
0.250 1.000 1.94e-4 4.41e-4 ✓ sig. —
Genetic neurodegenerative disease Sodium-dependent multivitamin transporter deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC5A6(2)
0.250 1.000 1.94e-4 4.41e-4 ✓ sig. —
Neurodegenerative disease Neurodevelopmental disorder with regression, abnormal movements, loss of speech, and seizures
1 gene
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1 of 1 corroborated by 2+ sources
IRF2BPL(3)
0.023 1.000 2.78e-3 3.56e-3 ✓ sig. —
Neurodegenerative disease Regressive neurodevelopmental disorder dystonia seizures
1 gene
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1 of 1 corroborated by 2+ sources
IRF2BPL(3)
0.023 1.000 2.78e-3 3.56e-3 ✓ sig. —
Amyotrophic lateral sclerosis type 10 Neurodegenerative disease
1 gene
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1 of 1 corroborated by 2+ sources
TARDBP(4)
0.023 1.000 2.78e-3 3.56e-3 ✓ sig. —
Neurodegenerative disease Spastic paraplegia 83, autosomal recessive
1 gene
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HPDL(1)
0.023 1.000 2.78e-3 3.56e-3 ✓ sig. —
Neurodegenerative disease Neurodevelopmental disorder with progressive spasticity and brain white matter abnormalities spastic paraplegia 83, autosomal recessive
1 gene
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HPDL(1)
0.023 1.000 2.78e-3 3.56e-3 ✓ sig. —
Neurodegenerative disease Neurodevelopmental disorder with progressive spasticity and brain white matter abnormalities
1 gene
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HPDL(1)
0.023 1.000 2.78e-3 3.56e-3 ✓ sig. —
Hydroxykynureninuria Neurodegenerative disease
1 gene
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1 of 1 corroborated by 2+ sources
KYNU(3)
0.023 1.000 2.78e-3 3.56e-3 ✓ sig. —
Choreoacanthocytosis Neurodegenerative disease
1 gene
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1 of 1 corroborated by 2+ sources
VPS13A(3)
0.023 1.000 2.78e-3 3.56e-3 ✓ sig. —
Cataract 30, pulverulent Neurodegenerative disease
1 gene
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1 of 1 corroborated by 2+ sources
VIM(3)
0.023 1.000 2.78e-3 3.56e-3 ✓ sig. —
Masp2 deficiency Neurodegenerative disease
1 gene
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1 of 1 corroborated by 2+ sources
TARDBP(2)
0.022 0.500 5.55e-3 6.58e-3 ✓ sig. —
Catel-manzke syndrome Neurodegenerative disease
1 gene
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1 of 1 corroborated by 2+ sources
KYNU(2)
0.022 0.500 5.55e-3 6.58e-3 ✓ sig. —

Showing 25 of 25 matching pairs, sorted by significance (ascending). Click a column header to sort.