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Gene Gene information from NCBI Gene database.
Entrez ID 892
Gene name Cyclin C
Gene symbol CCNC
Synonyms (NCBI Gene)
CycCSRB11hSRB11
Chromosome 6
Chromosome location 6q16.2
Summary The protein encoded by this gene is a member of the cyclin family of proteins. The encoded protein interacts with cyclin-dependent kinase 8 and induces the phophorylation of the carboxy-terminal domain of the large subunit of RNA polymerase II. The level
miRNA miRNA information provided by mirtarbase database.
192 Show/Hide all (192)
miRTarBase ID miRNA Experiments Reference
MIRT019265 hsa-miR-148b-3p Microarray 17612493
MIRT051792 hsa-let-7c-5p CLASH 23622248
MIRT871252 hsa-miR-1343 CLIP-seq
MIRT871253 hsa-miR-219-5p CLIP-seq
MIRT871254 hsa-miR-3148 CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
YBX1 Repression 20596676
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
19 Show/Hide all (19)
GO ID Ontology Definition Evidence Reference
GO:0000307 Component Cyclin-dependent protein kinase holoenzyme complex IDA 21806996
GO:0000307 Component Cyclin-dependent protein kinase holoenzyme complex IPI 15084261
GO:0005515 Function Protein binding IPI 7568034, 15084261, 19047373, 19914168, 20098423, 21516116, 21806996, 23602568, 23746844, 25344755, 25416956, 25852190, 26502155, 29568061, 29997244, 31515488, 32296183, 32707033, 32814053, 33961781
GO:0005634 Component Nucleus IBA
GO:0005634 Component Nucleus IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
123838 1581 ENSG00000112237
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P24863
Protein name Cyclin-C (SRB11 homolog) (hSRB11)
Protein function Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal R
PDB 3RGF , 4CRL , 4F6S , 4F6U , 4F6W , 4F70 , 4F7J , 4F7L , 4F7N , 4F7S , 4G6L , 5BNJ , 5CEI , 5FGK , 5HBE , 5HBH , 5HBJ , 5HNB , 5HVY , 5I5Z , 5ICP , 5IDN , 5IDP , 5XQX , 5XS2 , 6QTG , 6QTJ , 6R3S , 6T41 , 6TPA , 6Y0A , 8TQ2 , 8TQC , 8TQW , 9H8C , 9H8S
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00134 Cyclin_N 8 → 151 Cyclin, N-terminal domain Domain
Tissue specificity TISSUE SPECIFICITY: Highest levels in pancreas. High levels in heart, liver, skeletal muscle and kidney. Low levels in brain.
Sequence
MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQ
VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF
SYAFPKEFPYRMNHILECEFYLLELMDCCLI
VYHPYRPLLQYVQDMGQEDMLLPLAWRIV
NDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQ
WKNFDERKEMATILSKMPKPKPPPNSEGEQGPNGSQNSSYSQS
Sequence length 283
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
Reactome Pathway
PPARA activates gene expression
Generic Transcription Pathway
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
Constitutive Signaling by NOTCH1 PEST Domain Mutants
Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants
Transcriptional regulation of white adipocyte differentiation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
1
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Reference Evidence Score
CIC-rearranged sarcoma not provided ClinVar —
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Show/Hide Text Mining Associations (32)
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 8833152
★★★★★
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of colon Adenocarcinoma Of Colon BEFREE 15858123
★★★★★
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 26452386, 28147342
★★★★★
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 15863722 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Carcinoma Hepatocellular Hepatocellular carcinoma Pubtator 12679910 Stimulate
★★★★★
★☆☆☆☆
Found in Text Mining only
Carcinoma Hepatocellular Hepatocellular carcinoma Pubtator 32462022 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 24504440 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Colon Carcinoma Colon Carcinoma BEFREE 22379099
★★★★★
★☆☆☆☆
Found in Text Mining only
Colonic Neoplasms Colonic neoplasm Pubtator 15858123 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Colorectal Carcinoma Colorectal Cancer BEFREE 29737445
★★★★★
★☆☆☆☆
Found in Text Mining only