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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Acetyl-coa carboxylase deficiency Celiac disease
1 gene
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1 of 1 corroborated by 2+ sources
ACACA(2)
0.005 1.000 1.25e-2 1.40e-2 ✓ sig. —
glycogen storage disease IXd Peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
PHKA1(2)
0.005 1.000 1.25e-2 1.39e-2 ✓ sig. —
goldberg-shprintzen syndrome Peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
KIFBP(2)
0.005 1.000 1.25e-2 1.39e-2 ✓ sig. —
Cataract-growth hormone deficiency-skeletal dysplasia syndrome Peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
IARS2(5)
0.005 1.000 1.25e-2 1.39e-2 ✓ sig. —
Ectopic thyroid tissue Peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
FBXO31(2)
0.005 1.000 1.25e-2 1.39e-2 ✓ sig. —
Ataxia with oculomotor apraxia and hypoalbuminemia Peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
APTX(2)
0.005 1.000 1.25e-2 1.39e-2 ✓ sig. —
Axonal neuropathy with neuromyotonia Peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
HINT1(3)
0.005 1.000 1.25e-2 1.39e-2 ✓ sig. —
Childhood-onset basal ganglia degeneration syndrome Peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
VAC14(3)
0.005 1.000 1.25e-2 1.39e-2 ✓ sig. —
CNGB1-related retinopathy Peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
CNGB1(2)
0.005 1.000 1.25e-2 1.39e-2 ✓ sig. —
Circadian rhythm sleep disorder Hyperuricemia
1 gene
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CNTN5(1)
0.015 0.333 1.24e-2 1.39e-2 ✓ sig. —
Cystinuria Polycystic kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC7A9(8)
0.019 0.250 1.24e-2 1.39e-2 ✓ sig. —
Congenital progressive bone marrow failure-b-cell immunodeficiency-skeletal dysplasia syndrome Willis-ekbom disease
1 gene
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1 of 1 corroborated by 2+ sources
MYSM1(3)
0.005 1.000 1.24e-2 1.39e-2 ✓ sig. —
intellectual developmental disorder 59 Willis-ekbom disease
1 gene
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1 of 1 corroborated by 2+ sources
CAMK2G(2)
0.005 1.000 1.24e-2 1.39e-2 ✓ sig. —
intellectual developmental disorder, autosomal dominant 65 Willis-ekbom disease
1 gene
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1 of 1 corroborated by 2+ sources
KDM4B(2)
0.005 1.000 1.24e-2 1.39e-2 ✓ sig. —
Trident hand Willis-ekbom disease
1 gene
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1 of 1 corroborated by 2+ sources
NPR2(2)
0.005 1.000 1.24e-2 1.39e-2 ✓ sig. —
Benign familial pemphigus Willis-ekbom disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP2C1(2)
0.005 1.000 1.24e-2 1.39e-2 ✓ sig. —
platelet-type bleeding disorder 15 Willis-ekbom disease
1 gene
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1 of 1 corroborated by 2+ sources
ACTN1(2)
0.005 1.000 1.24e-2 1.39e-2 ✓ sig. —
leukodystrophy, hypomyelinating, 22 Willis-ekbom disease
1 gene
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1 of 1 corroborated by 2+ sources
CLDN11(2)
0.005 1.000 1.24e-2 1.39e-2 ✓ sig. —
3-methylcrotonyl-coa carboxylase deficiency Lewy body disease
1 gene
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1 of 1 corroborated by 2+ sources
MCCC1(5)
0.010 0.500 1.23e-2 1.38e-2 ✓ sig. —
Brugada syndrome Lipoyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LIPT2(2)
0.015 0.333 1.22e-2 1.37e-2 ✓ sig. —
Male infertility round headed spermatozoa Teratozoospermia
1 gene
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SPATA16(1)
0.029 0.143 1.22e-2 1.37e-2 ✓ sig. —
Corticobasal degeneration Progressive supranuclear palsy
1 gene
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1 of 1 corroborated by 2+ sources
MOBP(2)
0.029 0.143 1.22e-2 1.37e-2 ✓ sig. —
Developmental delay with impaired growth and dysmorphic facies Mitral valve prolapse
1 gene
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1 of 1 corroborated by 2+ sources
SPTBN1(5)
0.020 0.250 1.22e-2 1.36e-2 ✓ sig. —
Amelocerebrohypohidrotic syndrome Fatty liver
1 gene
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1 of 1 corroborated by 2+ sources
SLC13A5(4)
0.011 0.500 1.20e-2 1.35e-2 ✓ sig. —
Pituitary stalk interruption syndrome Renal pelvis neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
FANCA(2)
0.027 0.167 1.20e-2 1.35e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.