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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Pancreatic neoplasms Tropical calcific pancreatitis
1 gene
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1 of 1 corroborated by 2+ sources
SPINK1(5)
0.008 0.500 1.51e-2 1.67e-2 ✓ sig. —
Connective tissue disease Smith-mccort dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
DYM(6)
0.008 0.500 1.51e-2 1.67e-2 ✓ sig. —
Congenital epithelial dysplasia of intestine Pancreatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
EPCAM(2)
0.008 0.500 1.51e-2 1.67e-2 ✓ sig. —
Circadian rhythm sleep disorder Large artery stroke
1 gene
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CNTN5(1)
0.012 0.333 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy Neurogenic bladder
1 gene
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1 of 1 corroborated by 2+ sources
CHRM2(2)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy Neurooculocardio-genitourinary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WDR37(6)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy Intellectual developmental disorder dysmorphic seizures
1 gene
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1 of 1 corroborated by 2+ sources
OTUD6B(5)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy Intellectual developmental disorder seizures language
1 gene
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1 of 1 corroborated by 2+ sources
SETD1B(3)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy Juvenile absence epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
EFHC1(3)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
developmental and epileptic encephalopathy, 77 Epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
PIGQ(2)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Early-onset seizures-distal limb anomalies-facial dysmorphism-global developmental delay syndrome Epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
OTUD6B(2)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Ataxia with oculomotor apraxia and hypoalbuminemia Epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
APTX(2)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy Partial corpus callosum agenesis
1 gene
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1 of 1 corroborated by 2+ sources
KPNA7(3)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
1q44 microdeletion syndrome Epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
HNRNPU(3)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy hermansky-pudlak syndrome 4
1 gene
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1 of 1 corroborated by 2+ sources
HPS4(2)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy X-linked epilepsy with learning disability and behavior disorder syndrome
1 gene
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SYN1(1)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy X-linked epilepsy with variable learning disabilities and behavior disorders
1 gene
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1 of 1 corroborated by 2+ sources
SYN1(4)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy X-linked epilepsy-learning disabilities-behavior disorders syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SYN1(2)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Fanconi anemia Renal pelvis neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
FANCA(8)
0.022 0.167 1.51e-2 1.67e-2 ✓ sig. —
Cannabis abuse Rib fracture
1 gene
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TENM2(1)
0.008 0.500 1.50e-2 1.66e-2 ✓ sig. —
Butyryl-coa dehydrogenase deficiency Cannabis abuse
1 gene
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1 of 1 corroborated by 2+ sources
ACADS(3)
0.008 0.500 1.50e-2 1.66e-2 ✓ sig. —
3-methylcrotonyl-coa carboxylase deficiency Cannabis abuse
1 gene
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1 of 1 corroborated by 2+ sources
MCCC2(5)
0.008 0.500 1.50e-2 1.66e-2 ✓ sig. Cluster 2 →
Autoinflammatory syndrome, familial, X-linked, Behcet-like 2 Dental caries
1 gene
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1 of 1 corroborated by 2+ sources
ELF4(5)
0.004 1.000 1.50e-2 1.66e-2 ✓ sig. —
autosomal recessive osteopetrosis 8 Dental caries
1 gene
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1 of 1 corroborated by 2+ sources
SNX10(2)
0.004 1.000 1.50e-2 1.66e-2 ✓ sig. —
Dental caries netherton syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPINK5(2)
0.004 1.000 1.50e-2 1.66e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.