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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Alpha thalassemia erythrocytosis, familial, 7
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(3), HBA2(3)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 72 →
Anastomosing haemangioma Congenital hemangioma
2 genes
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2 of 2 corroborated by 2+ sources
GNA11(2), GNAQ(2)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 40 →
Apoceruloplasmin deficiency Ferroxidase deficiency
2 genes
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2 of 2 corroborated by 2+ sources
CP(3), SLC40A1(2)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 231 →
Keratitis-ichthyosis-deafness syndrome Senter syndrome
2 genes
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1 of 2 corroborated by 2+ sources
GJB6(1), GJB2(3)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 210 →
Congenital scoliosis Geleophysic dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
FBN1(5), LTBP3(6)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 52 →
Craniofacial dysostosis Crouzon syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FGFR2(7), ERF(2)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. —
Craniofaciosynostosis Trigonocephaly
2 genes
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2 of 2 corroborated by 2+ sources
FGFR1(3), FREM1(4)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 185 →
Craniometadiaphyseal dysplasia Craniometaphyseal dysplasia
2 genes
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1 of 2 corroborated by 2+ sources
ANKH(6), OTULIN(1)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 208 →
Craniometaphyseal dysplasia Schwartz-lelek syndrome
2 genes
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2 of 2 corroborated by 2+ sources
ANKH(6), GJA1(6)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 208 →
Curry-hall syndrome Weyers acrofacial dysostosis
2 genes
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2 of 2 corroborated by 2+ sources
EVC(4), EVC2(4)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 289 →
Cystinosis Nephropathic cystinosis
2 genes
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1 of 2 corroborated by 2+ sources
CTNS(8), TAX1BP3(1)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. —
Deafness with congenital onychodystrophy Digitrenocerebral syndrome
2 genes
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1 of 2 corroborated by 2+ sources
TBC1D24(1), ATP6V1B2(3)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 90 →
Deafness, aminoglycoside-induced Deafness, sensorineural, autosomal-mitochondrial type
2 genes
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1 of 2 corroborated by 2+ sources
ND1(1), COX1(2)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 251 →
Deafness, nonsyndromic sensorineural, mitochondrial Deafness, sensorineural, autosomal-mitochondrial type
2 genes
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1 of 2 corroborated by 2+ sources
ND1(1), COX1(2)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 251 →
Mandibuloacral dysostosis Restrictive dermopathy
2 genes
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2 of 2 corroborated by 2+ sources
LMNA(5), ZMPSTE24(4)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 65 →
methemoglobinemia, alpha type Unstable hemoglobin disease
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(3), HBA2(3)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 72 →
erythrocytosis, familial, 7 Unstable hemoglobin disease
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(3), HBA2(3)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 72 →
Caudal regression syndrome Sacral defect
2 genes
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2 of 2 corroborated by 2+ sources
PCSK5(2), VANGL1(5)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 94 →
Cerebral creatine deficiency syndrome Creatine deficiency
2 genes
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2 of 2 corroborated by 2+ sources
GAMT(3), SLC6A8(4)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 358 →
Chondrocalcinosis Craniometadiaphyseal dysplasia
2 genes
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1 of 2 corroborated by 2+ sources
ANKH(5), OTULIN(1)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 208 →
Benign hypercalcemia Hypocalciuric hypercalcemia
2 genes
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2 of 2 corroborated by 2+ sources
AP2S1(6), CASR(7)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. —
Beta-hydroxyisobutyryl-coa deacylase deficiency Cowchock syndrome
2 genes
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1 of 2 corroborated by 2+ sources
AIFM1(2), RAB33A(1)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. —
Hearing loss with stapes fixation Senter syndrome
2 genes
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2 of 2 corroborated by 2+ sources
GJB6(2), GJB2(2)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 210 →
Hemoglobin barts fetalis syndrome methemoglobinemia, alpha type
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(3), HBA2(3)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 72 →
Hemoglobin h disease methemoglobinemia, alpha type
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(6), HBA2(6)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 72 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.