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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Colorectal neoplasms Intellectual developmental disorder autism speech dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
CHD1(2)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —
Diaphragm disease Osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
WNT3A(2)
0.007 0.500 1.89e-2 2.06e-2 ✓ sig. —
Ankle fracture Osteoporosis
1 gene
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WNT16(1)
0.007 0.500 1.89e-2 2.06e-2 ✓ sig. —
Heart disease Rib fracture
1 gene
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TENM2(1)
0.007 0.500 1.89e-2 2.06e-2 ✓ sig. —
Lewis lung carcinoma Mesothelioma
1 gene
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TXNRD1(1)
0.007 0.500 1.87e-2 2.05e-2 ✓ sig. —
Congenital cataract hearing loss developmental delay syndrome Developmental disability
1 gene
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1 of 1 corroborated by 2+ sources
SLC33A1(3)
0.007 0.500 1.85e-2 2.02e-2 ✓ sig. —
adult neuronal ceroid lipofuscinosis Developmental disability
1 gene
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1 of 1 corroborated by 2+ sources
CTSF(2)
0.007 0.500 1.85e-2 2.02e-2 ✓ sig. —
Developmental disability Intellectual developmental disorder dysmorphic ptosis
1 gene
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1 of 1 corroborated by 2+ sources
BRPF1(5)
0.007 0.500 1.85e-2 2.02e-2 ✓ sig. —
Multiple myeloma Thyroid hormone metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
DIO1(3)
0.007 0.500 1.85e-2 2.02e-2 ✓ sig. —
Glycine encephalopathy Osteosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
GLDC(8)
0.016 0.200 1.84e-2 2.01e-2 ✓ sig. —
Hypertyrosinemia Motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
ALS2(2)
0.013 0.250 1.83e-2 2.00e-2 ✓ sig. —
Acetyl-coa acetyltransferase deficiency Seizures
1 gene
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1 of 1 corroborated by 2+ sources
ACAT1(3)
0.007 0.500 1.82e-2 1.99e-2 ✓ sig. —
Hyperlipidemia propionic acidemia
1 gene
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1 of 1 corroborated by 2+ sources
PCCB(2)
0.007 0.500 1.82e-2 1.99e-2 ✓ sig. —
Intellectual developmental disorder speech peripheral neuropathy Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
NEMF(5)
0.007 0.500 1.82e-2 1.99e-2 ✓ sig. —
Developmental delay with or without intellectual or behavioral abnormalities Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
TAOK1(4)
0.007 0.500 1.82e-2 1.99e-2 ✓ sig. —
Dorfman-chanarin disease Gastroesophageal reflux disease
1 gene
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1 of 1 corroborated by 2+ sources
ABHD5(3)
0.004 1.000 1.81e-2 1.98e-2 ✓ sig. —
Gastroesophageal reflux disease Thauvin-robinet-faivre syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FIBP(3)
0.004 1.000 1.81e-2 1.98e-2 ✓ sig. —
Borderline personality disorder Depression
1 gene
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TPH1(1)
0.004 1.000 1.81e-2 1.98e-2 ✓ sig. —
Aromatic l-amino-acid decarboxylase deficiency Depression
1 gene
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1 of 1 corroborated by 2+ sources
DDC(3)
0.004 1.000 1.81e-2 1.98e-2 ✓ sig. —
Gastroesophageal reflux disease neonatal/infantile epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNH5(2)
0.004 1.000 1.81e-2 1.98e-2 ✓ sig. —
Depression neurodevelopmental disorder with language impairment and behavioral abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
GRIA2(2)
0.004 1.000 1.81e-2 1.98e-2 ✓ sig. —
Gastroesophageal reflux disease microcephaly and chorioretinopathy 1
1 gene
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1 of 1 corroborated by 2+ sources
TUBGCP6(2)
0.004 1.000 1.81e-2 1.98e-2 ✓ sig. —
Gastroesophageal reflux disease microcornea-myopic chorioretinal atrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.004 1.000 1.81e-2 1.98e-2 ✓ sig. —
Gastroesophageal reflux disease Muggenthaler-chowdhury-chioza syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HYAL2(3)
0.004 1.000 1.81e-2 1.98e-2 ✓ sig. —
Depression systemic lupus erythematosus 17
1 gene
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1 of 1 corroborated by 2+ sources
TLR7(2)
0.004 1.000 1.81e-2 1.98e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.