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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
hereditary spastic paraplegia 8 Stress urinary incontinence
1 gene
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1 of 1 corroborated by 2+ sources
WASHC5(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 188 →
hereditary thrombocytopenia and hematologic cancer predisposition syndrome Transient myeloproliferative disorder
1 gene
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1 of 1 corroborated by 2+ sources
RUNX1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 125 →
hermansky-pudlak syndrome 10 X-linked ocular abinism
1 gene
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1 of 1 corroborated by 2+ sources
AP3D1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 414 →
holoprosencephaly 3 Triphalangeal thumb-polysyndactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SHH(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 232 →
homocystinuria due to methylene tetrahydrofolate reductase deficiency Mitral valve disease
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
homocystinuria due to methylene tetrahydrofolate reductase deficiency Rheumatic disease of mitral valve
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
homocystinuria due to methylene tetrahydrofolate reductase deficiency Rheumatic mitral regurgitation
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Hyper-igd syndrome Mevalonate kinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MVK(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 316 →
hypercholesterolemia, autosomal dominant, type B Isolated systolic hypertension
1 gene
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1 of 1 corroborated by 2+ sources
APOB(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 140 →
Hyperferritinemia neuroferritinopathy
1 gene
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1 of 1 corroborated by 2+ sources
FTL(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Hyperkalemia Steroid 17-alpha-monooxygenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYP17A1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Hyperkalemia Ventricular outflow obstruction
1 gene
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1 of 1 corroborated by 2+ sources
INS(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 112 →
Testis atrophy Ziegler-huang syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC30A7(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Restrictive dermopathy Tight skin contracture syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 65 →
Anemia, x-linked Transient myeloproliferative disorder
1 gene
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1 of 1 corroborated by 2+ sources
GATA1(5)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 125 →
Thrombocytopenia with dyserythropoietic anemia Transient myeloproliferative disorder
1 gene
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1 of 1 corroborated by 2+ sources
GATA1(7)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 125 →
Dyserythropoietic anemia with abnormal platelets and neutropenia Transient myeloproliferative disorder
1 gene
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1 of 1 corroborated by 2+ sources
GATA1(5)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 125 →
GATA1-Related X-Linked Cytopenia Transient myeloproliferative disorder
1 gene
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1 of 1 corroborated by 2+ sources
GATA1(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 125 →
Tremor-ataxia-central hypomyelination syndrome Wiedemann-rautenstrauch syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POLR3A(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Trisomy Vulvar lichen sclerosus
1 gene
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1 of 1 corroborated by 2+ sources
CDKN2A(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Tyrosine hydroxylase deficiency Tyrosine hydroxylase–deficient dopa-responsive dystonia
1 gene
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1 of 1 corroborated by 2+ sources
TH(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Scapuloperoneal myopathy Uruguay faciocardio-musculoskeletal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FHL1(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Uruguay faciocardio-musculoskeletal syndrome X-linked emery-dreifuss muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
FHL1(6)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 415 →
Uruguay faciocardio-musculoskeletal syndrome X-linked myopathy
1 gene
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1 of 1 corroborated by 2+ sources
FHL1(5)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 415 →
Microvascular angina Uterine disease
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 204 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.