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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Medullary carcinoma Medullary thyroid cancer
1 gene
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RET(1)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 152 →
Medullary carcinoma multiple endocrine neoplasia type 2B
1 gene
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1 of 1 corroborated by 2+ sources
RET(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 152 →
Medullary carcinoma multiple endocrine neoplasia type 2A
1 gene
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1 of 1 corroborated by 2+ sources
RET(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 152 →
Feingold syndrome megalencephaly-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYCN(6)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
melanoma-pancreatic cancer syndrome Vulvar lichen sclerosus
1 gene
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1 of 1 corroborated by 2+ sources
CDKN2A(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
mend syndrome X-linked chondrodysplasia punctata
1 gene
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1 of 1 corroborated by 2+ sources
EBP(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
microcephaly 2, primary, autosomal recessive, with or without cortical malformations Skraban-deardorff syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WDR62(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Microvascular angina Mitral valve disease
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Microvascular angina Rheumatic disease of mitral valve
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Microvascular angina Rheumatic mitral regurgitation
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Middle ear cholesteatoma Vaginal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
IL2(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Middle lobe syndrome Townes-brocks syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SALL1(7)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
mitchell syndrome Peroxisomal acyl-coa oxidase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ACOX1(5)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Mitral valve disease renal tubular dysgenesis - ACE
1 gene
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1 of 1 corroborated by 2+ sources
ACE(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 195 →
Mucocutaneous venous malformations Venous malformation
1 gene
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1 of 1 corroborated by 2+ sources
TEK(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 261 →
multiple endocrine neoplasia type 1 Pituitary gigantism
1 gene
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1 of 1 corroborated by 2+ sources
MEN1(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 82 →
multiple symmetric lipomatosis with partial lipodystrophy Nail dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Myeloproliferative disease, unclassifiable Myofibromatosis
1 gene
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1 of 1 corroborated by 2+ sources
PDGFRB(5)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
MYH7-related skeletal myopathy Parieto-occipital craniosynostosis
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 89 →
Myosin storage myopathy Parieto-occipital craniosynostosis
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 89 →
Myotonia Paramyotonia congenita
1 gene
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1 of 1 corroborated by 2+ sources
SCN4A(5)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 163 →
Nasu-hakola disease Polycystic lipomembranous osteodysplasia with sclerosing leukoencephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
TYROBP(6)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 333 →
Neonatal diabetes mellitus with congenital hypothyroidism Neonatal diabetes-congenital hypothyroidism-congenital glaucoma-hepatic fibrosis-polycystic kidney syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLIS3(6)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 394 →
neurodegeneration with brain iron accumulation 9 Vitreoretinochoroidopathy
1 gene
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1 of 1 corroborated by 2+ sources
FTH1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
NKX2.5-related congenital, conduction and myopathic heart disease Splenic hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
NKX2-5(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 161 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.