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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Lateral temporal lobe epilepsy Sacroiliac arthritis
1 gene
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RELN(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Lateral temporal lobe epilepsy Sacroiliac joint synovitis
1 gene
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RELN(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
legius syndrome Neurofibromatosis
1 gene
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1 of 1 corroborated by 2+ sources
SPRED1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 77 →
legius syndrome Neurofibromatosis-noonan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPRED1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 77 →
Developmental delay with facial dysmorphism syndrome Discordant ventriculoarterial connection
1 gene
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1 of 1 corroborated by 2+ sources
MED13L(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Diabetes insipidus Hereditary arginine vasopressin deficiency
1 gene
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1 of 1 corroborated by 2+ sources
AVP(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Diabetes insipidus Eye pain
1 gene
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1 of 1 corroborated by 2+ sources
POMC(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Diffuse gastric and lobular breast cancer syndrome Patterned macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CTNNA1(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Digenic hemochromatosis hemochromatosis type 3
1 gene
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1 of 1 corroborated by 2+ sources
TFR2(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 135 →
Digenic hemochromatosis hemochromatosis type 1
1 gene
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1 of 1 corroborated by 2+ sources
HFE(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Digenic hemochromatosis hemochromatosis type 2B
1 gene
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1 of 1 corroborated by 2+ sources
HAMP(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 135 →
dilated cardiomyopathy 1L Salivary gland disease
1 gene
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1 of 1 corroborated by 2+ sources
SGCD(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
dilated cardiomyopathy 2B Heimler syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATAD1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 219 →
Discordant ventriculoarterial connection Microvascular angina
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Discordant ventriculoarterial connection homocystinuria due to methylene tetrahydrofolate reductase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Discordant ventriculoarterial connection immunodeficiency 114, folate-responsive
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 113 →
Anonychia Dominant dystrophic epidermolysis bullosa, albopapular type
1 gene
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COL7A1(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 160 →
Dopa-responsive dystonia GTP cyclohydrolase I deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GCH1(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 112 →
Dopa-responsive dystonia Intellectual developmental disorder language neurodegenerative
1 gene
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1 of 1 corroborated by 2+ sources
NR4A2(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Dopamine transporter deficiency syndrome Mild cognitive impairment
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A3(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 392 →
Doyne honeycomb retinal dystrophy PRPH2-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
PRPH2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Doyne honeycomb retinal dystrophy Factor i deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CFI(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 107 →
Duplication of pituitary gland Gorlin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PTCH2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 203 →
Dysgenesis of corpus callosum koolen-de vries syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KANSL1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Congenital idiopathic intestinal pseudoobstruction Dysgenesis of corpus callosum
1 gene
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1 of 1 corroborated by 2+ sources
FLNA(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 62 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.