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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Autoimmune hemolytic anemia Autoinflammatory syndrome with immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 321 →
Autoimmune hemolytic anemia Autoinflammatory syndrome, familial, with or without immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 321 →
Autoimmune hemolytic anemia Autoimmunity-autoinflammation-immunodeficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 321 →
Autoimmune hemolytic anemia Cutis marmorata
1 gene
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1 of 1 corroborated by 2+ sources
TPP2(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Benign concentric annular macular dystrophy Vitelliform macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG1(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 303 →
Benign mesial temporal lobe epilepsy Periventricular heterotopia
1 gene
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1 of 1 corroborated by 2+ sources
CPA6(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 259 →
Benign paroxysmal torticollis of infancy Hemiplegic migraine
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1A(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Bernard-soulier syndrome hereditary von Willebrand disease
1 gene
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1 of 1 corroborated by 2+ sources
VWF(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 266 →
Bernard-soulier syndrome platelet-type von Willebrand disease
1 gene
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1 of 1 corroborated by 2+ sources
GP1BA(8)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 266 →
Bernard-soulier syndrome platelet-type bleeding disorder 18
1 gene
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1 of 1 corroborated by 2+ sources
RASGRP2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Beta-ketothiolase deficiency Carbohydrate metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
ACAT1(5)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Beta-propeller protein-associated neurodegeneration Hemiplegic migraine
1 gene
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1 of 1 corroborated by 2+ sources
WDR45(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 391 →
Beukes hip dysplasia Congenital hip dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
UFSP2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 11 →
Bifid nail Coach syndrome
1 gene
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OFD1(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Bifid nail Simpson-golabi-behmel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
OFD1(5)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Bilateral microphthalmos Palmoplantar keratoderma with congenital alopecia
1 gene
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1 of 1 corroborated by 2+ sources
GJA1(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 92 →
Bilateral microphthalmos progressive retinal dystrophy due to retinol transport defect
1 gene
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1 of 1 corroborated by 2+ sources
RBP4(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Toxic nodular goiter Uterine polyp
2 genes
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NFIA(1), TERT(1)
0.050 0.118 3.12e-4 7.71e-4 ✓ sig. —
Moyamoya disease Peripheral vascular disease
3 genes
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HDAC9(1), TWIST1(1), DOK7(1)
0.032 0.091 3.11e-4 7.71e-4 ✓ sig. —
Cerebral amyloid angiopathy Vascular dementia
5 genes
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3 of 5 corroborated by 2+ sources
APP(6), ITM2B(3), APOE(3), GRIK2(1), PRNP(1)
0.026 0.070 3.08e-4 7.71e-4 ✓ sig. —
Galloway-mowat syndrome Genetic steroid-resistant nephrotic syndrome
2 genes
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2 of 2 corroborated by 2+ sources
NUP107(5), NUP133(6)
0.044 0.167 3.08e-4 7.71e-4 ✓ sig. Cluster 30 →
Galloway-mowat syndrome Hereditary steroid-resistant nephrotic syndrome
2 genes
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2 of 2 corroborated by 2+ sources
NUP107(5), NUP133(6)
0.044 0.167 3.08e-4 7.71e-4 ✓ sig. Cluster 30 →
Congenital diaphragmatic hernia Fraser syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FRAS1(7), FREM2(6)
0.051 0.100 3.00e-4 7.52e-4 ✓ sig. —
Osteosclerosis Otosclerosis
2 genes
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2 of 2 corroborated by 2+ sources
LTBP3(3), TNFSF11(2)
0.034 0.250 2.97e-4 7.44e-4 ✓ sig. —
Cirrhosis Liver neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
KRT8(3), KRT18(4)
0.013 0.667 2.89e-4 7.22e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.