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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cloves syndrome Diaphragmatic malformations
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CA(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 44 →
Congenital intestinal duplication Diaphragmatic malformations
1 gene
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PIK3CA(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 44 →
Congenital macrodactylia Diaphragmatic malformations
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CA(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 44 →
Congenital malformation syndromes involving early overgrowth Diaphragmatic malformations
1 gene
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PIK3CA(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 44 →
dilated cardiomyopathy 1O Kleefstra syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ABCC9(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 234 →
Disseminated superficial actinic porokeratosis Hyper-igd syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MVK(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Distal axonal motor neuropathy-myofibrillar myopathy syndrome Vacuolar myopathy
1 gene
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1 of 1 corroborated by 2+ sources
HSPB8(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Congenital nemaline myopathy Distal nebulin myopathy
1 gene
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1 of 1 corroborated by 2+ sources
NEB(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 51 →
Dubin-johnson syndrome Pseudoxanthoma elasticum
1 gene
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1 of 1 corroborated by 2+ sources
ABCC2(5)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 128 →
Commissural facial cleft Duplication of pituitary gland
1 gene
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1 of 1 corroborated by 2+ sources
PTCH2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 203 →
dyskeratosis congenita, autosomal dominant 2 Respiratory system cancer
1 gene
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1 of 1 corroborated by 2+ sources
TERT(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 294 →
dyskeratosis congenita, autosomal recessive 3 Li-fraumeni syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WRAP53(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
dyskeratosis congenita, autosomal recessive 3 Telomere syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WRAP53(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 64 →
East syndrome Littles disease
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ10(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 58 →
East syndrome Paroxysmal dyskinesia
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ10(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 58 →
Arhinia-choanal atresia-microphthalmia syndrome Facioscapulohumeral muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SMCHD1(6)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 313 →
arterial calcification, generalized, of infancy, 1 Pseudoxanthoma elasticum
1 gene
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1 of 1 corroborated by 2+ sources
ENPP1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 128 →
arthrogryposis multiplex congenita 3, myogenic type Autosomal recessive ataxia
1 gene
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1 of 1 corroborated by 2+ sources
SYNE1(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Ataxia with oculomotor apraxia Ataxia with oculomotor apraxia and hypoalbuminemia
1 gene
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1 of 1 corroborated by 2+ sources
APTX(6)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Ataxia with oculomotor apraxia microcephaly, seizures, and developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
PNKP(7)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Ataxia, spastic, autosomal recessive with optic atrophy and impaired intellect Hereditary ataxia
1 gene
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SACS(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Ateleiotic dwarfism Growth hormone-secreting pituitary adenoma
1 gene
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1 of 1 corroborated by 2+ sources
GH1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 82 →
atransferrinemia Hypochromic microcytic anemia
1 gene
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1 of 1 corroborated by 2+ sources
TF(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Atypical multiple mole melanoma syndrome Li-fraumeni syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CDKN2A(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Autoimmune hemolytic anemia autoimmune lymphoproliferative syndrome due to CTLA4 haploinsufficiency
1 gene
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1 of 1 corroborated by 2+ sources
CTLA4(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.