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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hemosiderosis Iron overload
1 gene
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1 of 1 corroborated by 2+ sources
CP(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 231 →
Hepatic veno occlusive disease Microvascular angina
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Hepatoerythropoietic porphyria Porphyria cutanea tarda
1 gene
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1 of 1 corroborated by 2+ sources
UROD(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 196 →
Hereditary angioedema Hyperesthesia
1 gene
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1 of 1 corroborated by 2+ sources
KNG1(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 250 →
Hereditary angioedema Hereditary c1 esterase inhibitor deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Hereditary coproporphyria Porphyria cutanea tarda
1 gene
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1 of 1 corroborated by 2+ sources
CPOX(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Hereditary elliptocytosis Neonatal anemia
1 gene
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1 of 1 corroborated by 2+ sources
SPTB(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 400 →
Hereditary elliptocytosis Perinatal hemolytic anemia
1 gene
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1 of 1 corroborated by 2+ sources
SPTB(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 400 →
hereditary leiomyomatosis and renal cell cancer Leiomyosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
FH(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 213 →
Hereditary motor and sensory neuropathy multiple symmetric lipomatosis with partial lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 207 →
hereditary von Willebrand disease Periventricular heterotopia, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
VWF(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
hermansky-pudlak syndrome 7 Sensory peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
DTNBP1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Hyaline fibromatosis Osteolysis
1 gene
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1 of 1 corroborated by 2+ sources
ANTXR2(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
hypercholesterolemia, autosomal dominant, 3 Hypoalphalipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
PCSK9(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 140 →
hyperinsulinism due to glucokinase deficiency Prediabetes
1 gene
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1 of 1 corroborated by 2+ sources
GCK(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Chiari-frommel syndrome Hyperprolactinemia
1 gene
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1 of 1 corroborated by 2+ sources
PRLR(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 325 →
Hypervalinemia Maple syrup urine disease
1 gene
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1 of 1 corroborated by 2+ sources
BCAT2(6)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Aapoai amyloidosis Hypoalphalipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
APOA1(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Apolipoprotein a-i amyloidosis Hypoalphalipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
APOA1(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Hypohidrotic ectodermal dysplasia Schopf-schulz-passarge syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WNT10A(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
combined immunodeficiency due to STIM1 deficiency Tubular aggregate myopathy
1 gene
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1 of 1 corroborated by 2+ sources
STIM1(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 217 →
complex movement disorder with or without neurodevelopmental features Torsion dystonia
1 gene
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1 of 1 corroborated by 2+ sources
HPCA(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 167 →
Congenital atransferrinemia Hereditary hemochromatosis
1 gene
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1 of 1 corroborated by 2+ sources
TF(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Congenital atransferrinemia Iron overload
1 gene
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1 of 1 corroborated by 2+ sources
TF(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Congenital cardiovascular anomaly immunodeficiency 11b with atopic dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
CARD11(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 327 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.