Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
TSPAN12-related exudative vitreoretinopathy Vitreoretinal degeneration
1 gene
Show details
1 of 1 corroborated by 2+ sources
TSPAN12(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Complex cortical dysplasia with other brain malformations TUBB3-related tubulinopathy
1 gene
Show details
1 of 1 corroborated by 2+ sources
TUBB3(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Esophageal stenosis Turner syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
SOD2(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Congenital nystagmus Ureteral neoplasms
1 gene
Show details
1 of 1 corroborated by 2+ sources
AHR(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 191 →
Congenital nystagmus Urinary bladder calculi
1 gene
Show details
1 of 1 corroborated by 2+ sources
AHR(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 191 →
Adrenocortical carcinoma Urologic neoplasms
1 gene
Show details
1 of 1 corroborated by 2+ sources
TP53(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 3 →
Choroid plexus carcinoma Urologic neoplasms
1 gene
Show details
1 of 1 corroborated by 2+ sources
TP53(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 3 →
Choroid plexus papilloma Urologic neoplasms
1 gene
Show details
1 of 1 corroborated by 2+ sources
TP53(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 3 →
Atrophic retina Vitreoretinal degeneration
1 gene
Show details
ABCA4(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
ABCA4-related retinopathy Vitreoretinal degeneration
1 gene
Show details
1 of 1 corroborated by 2+ sources
ABCA4(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Rubinstein-taybi syndrome Waardenburg anophthalmia syndrome
1 gene
Show details
SMOC1(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 249 →
Vitreoretinal degeneration Wagner syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
VCAN(6)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Wieacker syndrome X-linked syndromic intellectual disability
1 gene
Show details
1 of 1 corroborated by 2+ sources
ZC4H2(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Wieacker-wolff syndrome X-linked syndromic intellectual disability
1 gene
Show details
1 of 1 corroborated by 2+ sources
ZC4H2(6)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Niemann-pick disease Wolman disease
1 gene
Show details
1 of 1 corroborated by 2+ sources
LIPA(6)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Accessory skin tag Wrinkly skin syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
X-linked female restricted facial dysmorphism, short stature, choanal atresia, intellectual disability X-linked syndromic intellectual disability
1 gene
Show details
1 of 1 corroborated by 2+ sources
USP9X(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 320 →
Charcot-marie-tooth disease, x-linked X-linked hereditary motor and sensory neuropathy
1 gene
Show details
DRP2(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 15 →
Charcot-marie-tooth disease, x-linked X-linked hereditary sensory and autonomic neuropathy with deafness
1 gene
Show details
1 of 1 corroborated by 2+ sources
AIFM1(6)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
X-linked myopathy with excessive autophagy X-linked syndromic intellectual disability
1 gene
Show details
1 of 1 corroborated by 2+ sources
RPL10(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 320 →
Penile hypospadia Zygodactyly
1 gene
Show details
1 of 1 corroborated by 2+ sources
HOXD13(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
B-cell chronic lymphocytic leukemia Combined immunodeficiency-lymphopenia-cancer predisposing syndrome due to aiolos deficiency
1 gene
Show details
IKZF3(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Combined psap deficiency Metachromatic leukodystrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
PSAP(7)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 118 →
Complement pathway abnormality systemic lupus erythematosus related to C1QA
1 gene
Show details
1 of 1 corroborated by 2+ sources
C1QA(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Complex cortical dysplasia with other brain malformations Cortical dysgenesis with pontocerebellar hypoplasia
1 gene
Show details
1 of 1 corroborated by 2+ sources
TUBB3(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.