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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
coffin-lowry syndrome Specific learning disability
1 gene
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1 of 1 corroborated by 2+ sources
RPS6KA3(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 268 →
Colonic disease Specific learning disability
1 gene
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GHR(1)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
combined immunodeficiency due to STIM1 deficiency Congenital structural myopathy
1 gene
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1 of 1 corroborated by 2+ sources
STIM1(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Atrioventricular septal defect Congenital aortic valve atresia
1 gene
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FOXP1(1)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital aneurysm of ascending aorta Congenital aphakia
1 gene
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FOXE3(1)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital aphakia familial thoracic aortic aneurysm and aortic dissection
1 gene
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1 of 1 corroborated by 2+ sources
FOXE3(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital cornea plana Hereditary corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
KERA(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital factor vii deficiency Thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
F7(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital factor xii deficiency Thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
F12(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital generalized hypercontractile muscle stiffness syndrome Congenital structural myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TPM3(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital hypotrichosis with juvenile macular dystrophy Hypotrichosis simplex
1 gene
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1 of 1 corroborated by 2+ sources
CDH3(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital ichthyosis-intellectual disability-spastic quadriplegia syndrome Hereditary corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
ELOVL4(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital malformation of cornea Hereditary corneal dystrophy
1 gene
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KERA(1)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Atrioventricular septal defect Congenital mitral valve atresia
1 gene
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FOXP1(1)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Developmental coordination disorder PTEN hamartoma tumor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PTEN(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Developmental coordination disorder frontotemporal dementia and/or amyotrophic lateral sclerosis 3
1 gene
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1 of 1 corroborated by 2+ sources
SQSTM1(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
amyotrophic lateral sclerosis type 1 Developmental coordination disorder
1 gene
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1 of 1 corroborated by 2+ sources
SOD1(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Ankylosis Developmental coordination disorder
1 gene
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1 of 1 corroborated by 2+ sources
FGFR2(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Developmental delay with autism spectrum disorder Eye neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HERC2(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Developmental delay with behavioral abnormalities Specific learning disability
1 gene
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1 of 1 corroborated by 2+ sources
ADGRL1(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 268 →
dilated cardiomyopathy 1C Myofibrillar myopathy
1 gene
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1 of 1 corroborated by 2+ sources
LDB3(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
dilated cardiomyopathy 1HH Myofibrillar myopathy
1 gene
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1 of 1 corroborated by 2+ sources
BAG3(6)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 4 →
dilated cardiomyopathy 1I Myofibrillar myopathy
1 gene
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1 of 1 corroborated by 2+ sources
DES(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 4 →
Autoimmune musculoskeletal system disorder Disabling pansclerotic morphea of childhood
1 gene
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1 of 1 corroborated by 2+ sources
STAT4(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 1 →
Distal myotilinopathy Myofibrillar myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYOT(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.