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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital vertebral-cardiac-renal anomalies syndrome Smith-lemli-opitz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NADSYN1(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Coronary vasospasm Resistant hypertension
1 gene
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1 of 1 corroborated by 2+ sources
NOS3(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 315 →
Coronary vasospasm Intestinal perforation
1 gene
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1 of 1 corroborated by 2+ sources
NOS3(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 315 →
Dermatitis herpetiformis Pregnancy disorder
1 gene
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TNF(1)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 300 →
Esophageal achalasia Triple a syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AAAS(3)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Coronary artery vasospasm Ventricular ectopy
1 gene
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1 of 1 corroborated by 2+ sources
NOS3(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 315 →
Intestinal perforation Ventricular ectopy
1 gene
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1 of 1 corroborated by 2+ sources
NOS3(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 315 →
Au-kline syndrome Von hippel-lindau syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VHL(7)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 385 →
Extrinsic allergic alveolitis MHC class I deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TAP1(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Mild cognitive impairment Parkinsonism-dystonia
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A3(4)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 392 →
Mirror movements Partial agenesis of corpus callosum
1 gene
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1 of 1 corroborated by 2+ sources
DCC(6)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Anti-glomerular basement membrane disease Mycosis fungoides
1 gene
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1 of 1 corroborated by 2+ sources
CTLA4(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Antithrombin deficiency Bronchiolitis
1 gene
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MUC5B(1)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 197 →
Brown tendon sheath syndrome Parathyroid disease
1 gene
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1 of 1 corroborated by 2+ sources
MAFB(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Capillary infantile hemangioma Endocrine neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
KDR(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Resistant hypertension Ventricular ectopy
1 gene
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1 of 1 corroborated by 2+ sources
NOS3(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 315 →
Discordant ventriculoarterial connection Right atrial isomerism
1 gene
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1 of 1 corroborated by 2+ sources
GDF1(3)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 113 →
Neurogenic diabetes insipidus Shy-drager syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AVP(3)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Diabetes insipidus Shy-drager syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AVP(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Nephrogenic diabetes insipidus Shy-drager syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AVP(4)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Hyperkalemic periodic paralysis Smith-lemli-opitz syndrome
1 gene
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CLCN1(1)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Spinocerebellar ataxia, x-linked X-linked sideroblastic anemia
1 gene
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1 of 1 corroborated by 2+ sources
ABCB7(4)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Dopa-responsive dystonia Hyperphenylalaninemia
1 gene
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1 of 1 corroborated by 2+ sources
SPR(4)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Cleft eyelid Dyschromatosis symmetrica hereditaria
1 gene
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1 of 1 corroborated by 2+ sources
ABCB6(7)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Congenital kidney anomaly Encephalocele
1 gene
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CEP290(1)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 70 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.