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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cutaneous polyarteritis nodosa Vertebral column disorder
1 gene
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1 of 1 corroborated by 2+ sources
SMAD3(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Carbamazepine hypersensitivity Vertebral column disorder
1 gene
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1 of 1 corroborated by 2+ sources
HLA-B(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 277 →
Thrombophlebitis Vertebral column disorder
1 gene
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1 of 1 corroborated by 2+ sources
HLA-B(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 277 →
Waardenburg syndrome Waardenburg syndrome type 4A
1 gene
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1 of 1 corroborated by 2+ sources
EDNRB(7)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Waardenburg syndrome Waardenburg syndrome type 4C
1 gene
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1 of 1 corroborated by 2+ sources
SOX10(8)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Optic neuritis Wilson disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP7B(5)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Oculocutaneous albinism X-linked cerebral cerebellar coloboma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WDR45(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Oculocutaneous albinism X-linked optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
WDR45(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Waardenburg syndrome Yemenite deaf-blind hypopigmentation syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX10(8)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Lethal congenital contracture syndrome Lethal neonatal rigidity and multifocal seizure syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BRAT1(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Lymphatic malformation Yellow nail syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CELSR1(5)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Lymphatic malformation lymphatic malformation 1
1 gene
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1 of 1 corroborated by 2+ sources
FLT4(4)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Giant cell glioblastoma LZTR1-related schwannomatosis
1 gene
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1 of 1 corroborated by 2+ sources
LZTR1(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Hyperhomocysteinemia Malabsorption syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC46A1(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Maturity-onset diabetes of the young maturity-onset diabetes of the young type 8
1 gene
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1 of 1 corroborated by 2+ sources
CEL(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Giant cell glioblastoma Metaphyseal enchondromatosis
1 gene
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1 of 1 corroborated by 2+ sources
IDH1(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Hyperhomocysteinemia methylcobalamin deficiency type cblG
1 gene
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1 of 1 corroborated by 2+ sources
MTR(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 121 →
Lymphatic malformation microcephaly with intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
MCPH1(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
mitochondrial DNA depletion syndrome 12B (cardiomyopathic type), autosomal recessive Progressive external ophthalmoplegia
1 gene
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1 of 1 corroborated by 2+ sources
SLC25A4(4)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Motor skills disorder PTEN hamartoma tumor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PTEN(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
frontotemporal dementia and/or amyotrophic lateral sclerosis 3 Motor skills disorder
1 gene
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1 of 1 corroborated by 2+ sources
SQSTM1(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
amyotrophic lateral sclerosis type 1 Motor skills disorder
1 gene
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1 of 1 corroborated by 2+ sources
SOD1(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Ankylosis Motor skills disorder
1 gene
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FGFR2(1)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
mucopolysaccharidosis type 4B Progressive intrahepatic cholestasis
1 gene
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1 of 1 corroborated by 2+ sources
GLB1(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
congenital myasthenic syndrome 7 Thyroid gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
SYT2(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 34 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.