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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Angle closure glaucoma congenital myasthenic syndrome 6
1 gene
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1 of 1 corroborated by 2+ sources
CHAT(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anterior segment mesenchymal dysgenesis Congenital primary aphakia
1 gene
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1 of 1 corroborated by 2+ sources
FOXE3(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anterior segment mesenchymal dysgenesis Congenital sclerocornea
1 gene
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GJA8(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Connective and soft tissue disorder Nephrosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
COL3A1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 334 →
Corpus callosum agenesis with facial anomalies and robin sequence Partington syndrome
1 gene
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DDX3X(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Bronchial hyperreactivity Cramp-fasciculation syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRPA1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 206 →
Creatine phosphokinase elevation Distal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
CAV3(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anterior segment mesenchymal dysgenesis CYP1B1-related glaucoma with or without anterior segment dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
CYP1B1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Cartilage disease Deafness-lymphedema-leukemia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATA2(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
autosomal recessive limb-girdle muscular dystrophy Delta-sarcoglycan-related limb-girdle muscular dystrophy r6
1 gene
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1 of 1 corroborated by 2+ sources
SGCD(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Blau syndrome Intestinal disease
1 gene
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1 of 1 corroborated by 2+ sources
NOD2(7)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 382 →
Bmp4-related ocular growth disorder Cartilage disease
1 gene
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1 of 1 corroborated by 2+ sources
BMP4(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Bmp4-related ocular growth disorder Stickler syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BMP4(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Brunner syndrome Hepatic encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
MAOA(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 57 →
Burnett schwartz berberian syndrome Developmental dysplasia of the hip
1 gene
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1 of 1 corroborated by 2+ sources
LRP1(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 194 →
Camptodactyly Esophageal ulcer
1 gene
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1 of 1 corroborated by 2+ sources
TLN2(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Cancer, alopecia, pigment dyscrasia, onychodystrophy, and keratoderma Esophageal ulcer
1 gene
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1 of 1 corroborated by 2+ sources
SASH1(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Capos syndrome Congenital epicanthus
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A3(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 238 →
Bicuspid aortic valve Cardiac anomalies-short stature-joint hypermobility-facial dysmorphism syndrome due to tab2 mutation
1 gene
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1 of 1 corroborated by 2+ sources
TAB2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 188 →
Arrhythmogenic right ventricular dysplasia cardiomyopathy, dilated, 2l
1 gene
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1 of 1 corroborated by 2+ sources
LDB3(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
cataract 50 with or without glaucoma Intestinal disease
1 gene
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1 of 1 corroborated by 2+ sources
TRPM3(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
20p12.3 microdeletion syndrome Hemochromatosis
1 gene
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1 of 1 corroborated by 2+ sources
BMP2(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Aceruloplasminemia Hemochromatosis
1 gene
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1 of 1 corroborated by 2+ sources
CP(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Acral self-healing collodion baby Lamellar ichthyosis
1 gene
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1 of 1 corroborated by 2+ sources
TGM1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 233 →
Acrokeratosis verruciformis Diabetic cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
ATP2A2(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 290 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.