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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital deformity of elbow X-linked centronuclear myopathy
1 gene
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DNM2(1)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. Cluster 59 →
congenital heart disease with heterotaxy syndrome Dextrocardia
1 gene
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1 of 1 corroborated by 2+ sources
ZIC3(3)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. Cluster 46 →
Bonnevie-ullrich syndrome Congenital isolated growth hormone deficiency
1 gene
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GH1(1)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Cobalamin c disease Donnai-barrow syndrome
1 gene
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LMBRD1(1)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Early onset alzheimers disease with behavioral disturbance Hereditary hemorrhagic telangiectasia
1 gene
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PSEN1(1)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Early onset alzheimers disease with behavioral disturbance Klippel-feil syndrome
1 gene
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LRRK2(1)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Congenital venous anomaly ehlers-danlos syndrome, classic type
1 gene
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1 of 1 corroborated by 2+ sources
COL5A1(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Embryonal carcinoma Gingival diseases
1 gene
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1 of 1 corroborated by 2+ sources
TNFRSF8(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. Cluster 406 →
Cardiac rhythm disease Paroxysmal tachycardia
1 gene
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1 of 1 corroborated by 2+ sources
SCN5A(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. Cluster 129 →
Ectopic rhythm Paroxysmal tachycardia
1 gene
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1 of 1 corroborated by 2+ sources
SCN5A(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. Cluster 129 →
Mayer-rokitansky-kuster-hauser syndrome Peho syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZNHIT3(6)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Hereditary angioedema Periodontal ehlers-danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
C1S(3)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Arthralgia Porokeratosis
1 gene
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1 of 1 corroborated by 2+ sources
MVK(6)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Hepatic veno occlusive disease Porphyruria
1 gene
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HFE(1)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. Cluster 196 →
Dermatofibrosarcoma protuberans Prostatic hyperplasia
1 gene
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1 of 1 corroborated by 2+ sources
PDGFB(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Diabetes mellitus ketosis prone Neonatal diabetes mellitus with congenital hypothyroidism
1 gene
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1 of 1 corroborated by 2+ sources
IL2RA(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Central nervous system non-hodgkin lymphoma Neutral lipid storage disease with ichthyosis
1 gene
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1 of 1 corroborated by 2+ sources
ANO10(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Intellectual developmental disorder hypotonic x-linked non-syndromic X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
HUWE1(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. Cluster 122 →
Focal cortical dysplasia Intellectual developmental disorder autism speech
1 gene
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1 of 1 corroborated by 2+ sources
TBR1(3)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Hereditary hemorrhagic telangiectasia juvenile polyposis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ENG(7)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Acroosteolysis Fahr's disease
1 gene
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1 of 1 corroborated by 2+ sources
PDGFRB(3)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Familial ventricular tachycardia Gingival diseases
1 gene
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1 of 1 corroborated by 2+ sources
ABCA5(4)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Frontonasal dysplasia Parietal foramina
1 gene
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1 of 1 corroborated by 2+ sources
ALX4(6)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Gallbladder disease Xanthomatosis
1 gene
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1 of 1 corroborated by 2+ sources
ABCG5(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Dermatofibrosarcoma protuberans Gingival diseases
1 gene
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1 of 1 corroborated by 2+ sources
PDGFB(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.