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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Biliary tract neoplasms Male breast carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
PRKACB(2)
0.125 0.333 9.74e-4 1.67e-3 ✓ sig. —
Macular telangiectasia Phosphoserine phosphatase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PSPH(3)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Macular telangiectasia Ocular dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
ELP4(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Macular telangiectasia spastic tetraplegia-thin corpus callosum-progressive postnatal microcephaly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC1A4(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Coloboma microphthalmia, isolated, with coloboma 7
1 gene
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1 of 1 corroborated by 2+ sources
ABCB6(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 272 →
Colobomatous microphthalmia microphthalmia, isolated, with coloboma 7
1 gene
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1 of 1 corroborated by 2+ sources
ABCB6(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
mitochondrial DNA depletion syndrome 12B (cardiomyopathic type), autosomal recessive Mitochondrial myopathy
1 gene
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1 of 1 corroborated by 2+ sources
SLC25A4(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Cystitis Mucocutaneous ulceration
1 gene
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1 of 1 corroborated by 2+ sources
RELA(4)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
inherited retinal dystrophy mucopolysaccharidosis type 3C
1 gene
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HGSNAT(1)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Muscle eye brain disease muscular dystrophy-dystroglycanopathy
1 gene
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1 of 1 corroborated by 2+ sources
LARGE1(3)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 14 →
Muscle eye brain disease muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11
1 gene
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1 of 1 corroborated by 2+ sources
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Muscle eye brain disease muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A13
1 gene
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1 of 1 corroborated by 2+ sources
B4GAT1(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 14 →
46,xy gonadal dysgenesis Testicular regression syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DHX37(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 38 →
Cor pulmonale Thiamine-responsive megaloblastic anemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A2(7)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Polymorphic catecholaminergic ventricular tachycardia Timothy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1C(6)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Myotonia Tremor
1 gene
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1 of 1 corroborated by 2+ sources
SCN4A(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Dyskinesia, drug-induced Tyrosine hydroxylase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TH(4)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Chuvash erythrocytosis Urinary system disease
1 gene
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1 of 1 corroborated by 2+ sources
VHL(5)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Urinary system disease Urinary tract obstruction
1 gene
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RIOX2(1)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 122 →
Intracranial aneurysm Wagner syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VCAN(6)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Congenital pontocerebellar hypoplasia neurodegeneration, childhood-onset, with cerebellar atrophy
1 gene
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1 of 1 corroborated by 2+ sources
AGTPBP1(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Corpus callosum agenesis with facial anomalies and cerebellar ataxia Craniofacial microsomia
1 gene
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1 of 1 corroborated by 2+ sources
FRMD4A(3)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 48 →
Craniofacial microsomia Intestinal dysmotility syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANO1(4)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 48 →
Craniofacial microsomia Deafness with labyrinthine aplasia, microtia, and microdontia
1 gene
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1 of 1 corroborated by 2+ sources
FGF3(7)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Cleft lip and palate Craniofaciocardiohepatic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AMOTL1(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.