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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Craniofacial ulnar renal syndrome Wiedemann-steiner syndrome
1 gene
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CHD7(1)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Choanal atresia syndrome Craniofacial ulnar renal syndrome
1 gene
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CHD7(1)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Christ-siemens-touraine syndrome Craniofrontonasal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
EDA(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 117 →
Crystal arthropathy Pseudoxanthoma elasticum
1 gene
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1 of 1 corroborated by 2+ sources
ENPP1(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 128 →
Bundle branch block Intellectual developmental disorder speech dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
SETBP1(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 271 →
Carcinoid tumor Sapho syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CDKAL1(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Anti-nmda receptor encephalitis Littles disease
1 gene
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1 of 1 corroborated by 2+ sources
IFIH1(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Aprosencephaly Coach syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Cerebral cortical atrophy Paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
SPG7(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 333 →
Beta-mannosidosis Post-operative atrial fibrillation
1 gene
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1 of 1 corroborated by 2+ sources
ADGRV1(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Post-operative atrial fibrillation Testotoxicosis
1 gene
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1 of 1 corroborated by 2+ sources
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Disseminated superficial actinic porokeratosis Hyper-immunoglobulin d syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MVK(3)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Dowling degos disease Weber-cockayne syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KRT5(6)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Coach syndrome Encephalocele
1 gene
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1 of 1 corroborated by 2+ sources
CC2D2A(3)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Endocrine neoplasms Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis
1 gene
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1 of 1 corroborated by 2+ sources
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Benign neonatal epilepsy Hemiplegia
1 gene
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1 of 1 corroborated by 2+ sources
SCN2A(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 165 →
autosomal dominant medullary cystic kidney disease with or without hyperuricemia Hypertensive heart disease
1 gene
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1 of 1 corroborated by 2+ sources
UMOD(2)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Bartsocas-papas syndrome Congenital skin anomaly
1 gene
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1 of 1 corroborated by 2+ sources
CHUK(5)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Bartsocas-papas syndrome Skin abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
CHUK(6)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Bilateral generalized polymicrogyria Laryngeal carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
RTTN(3)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Lig4 syndrome Omenn syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LIG4(5)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Mountain sickness Tricuspid valve disease
1 gene
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AEBP2(1)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Fanconi renotubular syndrome 4 with maturity-onset diabetes of the young monogenic diabetes
1 gene
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1 of 1 corroborated by 2+ sources
HNF4A(6)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Follicular cyst Hypertensive heart disease
1 gene
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1 of 1 corroborated by 2+ sources
SCARB1(3)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Genitourinary disease Ureterolithiasis
1 gene
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BCAS3(1)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.