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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Angel-shaped phalangoepiphyseal dysplasia Brachydactyly
1 gene
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1 of 1 corroborated by 2+ sources
GDF5(7)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Crest syndrome Disabling pansclerotic morphea of childhood
1 gene
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1 of 1 corroborated by 2+ sources
STAT4(4)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Epidermolysa bullosa simplex and limb girdle muscular dystrophy Epidermolysis bullosa
1 gene
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1 of 1 corroborated by 2+ sources
PLEC(8)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Beta thalassemia hemochromatosis type 2B
1 gene
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1 of 1 corroborated by 2+ sources
HAMP(3)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 135 →
Beta thalassemia hemochromatosis type 3
1 gene
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1 of 1 corroborated by 2+ sources
TFR2(3)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 135 →
Epidermolysis bullosa hereditary sensory and autonomic neuropathy type 6
1 gene
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1 of 1 corroborated by 2+ sources
DST(7)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Brachydactyly Hypertension and brachydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PDE3A(3)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Ataxia Parkinson-dementia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MAPT(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Epidermolysis bullosa PLEC-related muscular dystrophy-epidermolysis bullosa simplex spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLEC(8)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Beta thalassemia Postaxial acrofacial dysostosis
1 gene
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1 of 1 corroborated by 2+ sources
DHODH(5)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
primary ciliary dyskinesia 13 Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF1(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 46 →
primary ciliary dyskinesia 14 Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
CCDC39(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
primary ciliary dyskinesia 15 Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
CCDC40(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
primary ciliary dyskinesia 19 Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF11(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 46 →
primary ciliary dyskinesia 26 Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
CFAP298(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 46 →
primary ciliary dyskinesia 3 Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
DNAH5(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
primary ciliary dyskinesia 35 Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
ODAD4(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 46 →
Graft-versus-host disease Primary immunodeficiency with defective natural killer cell cytotoxicity
1 gene
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1 of 1 corroborated by 2+ sources
FCGR3A(4)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Brachydactyly Proximal symphalangism
1 gene
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1 of 1 corroborated by 2+ sources
NOG(5)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Acro-dermo-ungual-lacrimal-tooth syndrome Bladder exstrophy
1 gene
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1 of 1 corroborated by 2+ sources
TP63(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 27 →
Ankyloblepharon-ectodermal defects-cleft lip/palate Bladder exstrophy
1 gene
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1 of 1 corroborated by 2+ sources
TP63(5)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 27 →
Bladder exstrophy Limb-mammary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TP63(5)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 27 →
Bladder exstrophy Rudiger syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TP63(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 27 →
Blau syndrome Graft-versus-host disease
1 gene
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1 of 1 corroborated by 2+ sources
NOD2(7)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Brachydactyly Brachydactyly with hypertension
1 gene
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1 of 1 corroborated by 2+ sources
PDE3A(5)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.