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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Beta thalassemia TFRC-related combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
TFRC(3)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Hemorrhagic disease TPM4-related platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
TPM4(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 33 →
Crest syndrome TTC8-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
TTC8(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 25 →
Epidermolysis bullosa Ulnar-fibular ray defect and brachydactyly
1 gene
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RP1L1(1)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Ataxia Urocanate hydratase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
UROC1(7)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Cushing syndrome X-linked non progressive cerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
ATP2B3(3)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Graft-versus-host disease Yao syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NOD2(3)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Bladder exstrophy Yellow nail syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CELSR1(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Postaxial polydactyly Zunich neuroectodermal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PIGL(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Beta thalassemia Conn syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1H(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Conn syndrome Cushing syndrome
1 gene
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CACNA1H(1)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Charcot-Marie-tooth disease, axonal, type 2DD Cushing syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A1(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Chylothorax Situs ambiguus
1 gene
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PKD1L1(1)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 46 →
ciliary dyskinesia, primary, 38 Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
CFAP300(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 46 →
ciliary dyskinesia, primary, 40 Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
DNAH9(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 46 →
Right isomerism Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
GDF1(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Crest syndrome spinocerebellar ataxia, autosomal recessive 25
1 gene
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1 of 1 corroborated by 2+ sources
ATG5(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 25 →
Cushing syndrome Steroid 11-beta-monooxygenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYP11B1(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Cushing syndrome familial hyperaldosteronism type III
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ5(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
free sialic acid storage disease Intracerebral hemorrhage
1 gene
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1 of 1 corroborated by 2+ sources
SLC17A5(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Gingivitis Graft-versus-host disease
1 gene
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1 of 1 corroborated by 2+ sources
TNFRSF8(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Cushing syndrome Glucocorticoid receptor deficiency/resistance
1 gene
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1 of 1 corroborated by 2+ sources
NR3C1(6)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Graft-versus-host disease Granulomatous inflammatory arthritis-dermatitis-uveitis, familial
1 gene
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NOD2(1)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
2q37 microdeletion syndrome Brachydactyly
1 gene
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1 of 1 corroborated by 2+ sources
HDAC4(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Acrocapitofemoral dysplasia Brachydactyly
1 gene
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1 of 1 corroborated by 2+ sources
IHH(6)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 352 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.