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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Mucopolysaccharidosis mucopolysaccharidosis type 9
1 gene
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1 of 1 corroborated by 2+ sources
HYAL1(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Mucopolysaccharidosis mucopolysaccharidosis-plus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VPS33A(6)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 134 →
Multiple epiphyseal dysplasia with early-onset diabetes mellitus Sialolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
EIF2AK3(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 338 →
Centronuclear myopathy Multisystem disorder
1 gene
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1 of 1 corroborated by 2+ sources
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Congenital muscular dystrophy muscular dystrophy-dystroglycanopathy
1 gene
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1 of 1 corroborated by 2+ sources
LARGE1(3)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 14 →
Centronuclear myopathy myasthenic syndrome, congenital, 1b, fast-channel
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA1(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Combined oxidative phosphorylation defect Sialolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
WARS2(3)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Congenital central hypothyroidism Keratitis
1 gene
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1 of 1 corroborated by 2+ sources
TRHR(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Congenital merosin-deficient muscular dystrophy Congenital muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
LAMA2(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Dysarthria Focal dystonia
1 gene
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1 of 1 corroborated by 2+ sources
GNAL(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
FZD4-related exudative vitreoretinopathy Syndactyly
1 gene
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1 of 1 corroborated by 2+ sources
FZD4(3)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Gingivitis Nasopharyngeal carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TNFRSF8(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
glycogen storage disease due to glycogen branching enzyme deficiency Synovitis, acne, pustulosis, hyperostosis, and osteitis
1 gene
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1 of 1 corroborated by 2+ sources
GBE1(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
GNPTAB-mucolipidosis Mucopolysaccharidosis
1 gene
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1 of 1 corroborated by 2+ sources
GNPTAB(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Gollop-wolfgang complex Syndactyly
1 gene
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1 of 1 corroborated by 2+ sources
BHLHA9(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Disabling pansclerotic morphea of childhood Polymyositis
1 gene
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1 of 1 corroborated by 2+ sources
STAT4(3)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Centronuclear myopathy Dominant hereditary optic atrophy
1 gene
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OPA1(1)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Dursun syndrome Severe congenital neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
G6PC3(6)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Dysbiosis Keratitis
1 gene
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1 of 1 corroborated by 2+ sources
TLR4(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Congenital muscular dystrophy Dysferlinopathy
1 gene
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1 of 1 corroborated by 2+ sources
DYSF(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Dysferlinopathy Synovitis, acne, pustulosis, hyperostosis, and osteitis
1 gene
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1 of 1 corroborated by 2+ sources
DYSF(3)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Dysarthria Dyskinesia with orofacial involvement
1 gene
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1 of 1 corroborated by 2+ sources
ADCY5(5)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Dysarthria Dyskinesia, familial, with facial myokymia
1 gene
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1 of 1 corroborated by 2+ sources
ADCY5(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
ectodermal dysplasia and immunodeficiency 2 Nasopharyngeal carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
NFKBIA(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Atypical femoral fracture Skeletal dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
CHST3(3), GALNS(2)
0.034 0.087 1.38e-3 2.17e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.