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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Intracranial hypertension Mixed connective tissue disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A10(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
INTU-related skeletal ciliopathy Short rib dysplasia-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
INTU(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 22 →
joubert syndrome 17 Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
CPLANE1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Juvenile absence epilepsy Myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
EFHC1(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 47 →
Juvenile myoclonic epilepsy Myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CILK1(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Juvenile myoclonic epilepsy Short rib dysplasia-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CILK1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
leber-like hereditary optic neuropathy, autosomal recessive 1 Williams syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DNAJC30(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 60 →
Blood coagulation disorder Factor x deficiency
1 gene
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1 of 1 corroborated by 2+ sources
F10(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Factor xii deficiency Transient ischemic attack
1 gene
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1 of 1 corroborated by 2+ sources
F12(4)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
familial hyperaldosteronism type III Hyperaldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ5(6)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
familial hyperaldosteronism type III Hereditary atrial fibrillation
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ5(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
familial meningioma Meningioma
1 gene
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1 of 1 corroborated by 2+ sources
SMARCE1(6)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
fanconi anemia complementation group d2 Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
FANCD2(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 282 →
FLVCR1-related retinopathy with or without ataxia Short rib dysplasia-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FLVCR1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
frontotemporal dementia and/or amyotrophic lateral sclerosis 1 Progressive myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
C9orf72(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
frontotemporal dementia and/or amyotrophic lateral sclerosis 5 Polyneuropathy
1 gene
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1 of 1 corroborated by 2+ sources
CCNF(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Glass syndrome Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
SATB2(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Glycine n-methyltransferase deficiency Peroxisome biogenesis disorder
1 gene
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1 of 1 corroborated by 2+ sources
GNMT(5)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
glycogen storage disease due to glycogen branching enzyme deficiency Polyneuropathy
1 gene
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1 of 1 corroborated by 2+ sources
GBE1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Curry-jones syndrome Meningioma
1 gene
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1 of 1 corroborated by 2+ sources
SMO(5)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 292 →
Den hoed-de boer-voisin syndrome Hyperaldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
SATB1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Hereditary neuropathy with liability to pressure palsies Myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
PMP22(4)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Conduction disorder of the heart hereditary spherocytosis
1 gene
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1 of 1 corroborated by 2+ sources
ANK1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Deficiency anemia Partial deficiency of methylmalonyl-coenzyme a mutase
1 gene
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1 of 1 corroborated by 2+ sources
MMUT(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Hyperaldosteronism Peters plus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
B3GLCT(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.