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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Alopecia-intellectual disability syndrome Hypotrichosis simplex
1 gene
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1 of 1 corroborated by 2+ sources
LSS(3)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Amed syndrome Diabetes complications
1 gene
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1 of 1 corroborated by 2+ sources
ALDH2(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Amish infantile epilepsy syndrome Latent autoimmune diabetes in adults
1 gene
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1 of 1 corroborated by 2+ sources
ATXN2(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Anaplasia Diabetes complications
1 gene
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1 of 1 corroborated by 2+ sources
HIF1A(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Anaptoglobinemia Diabetes complications
1 gene
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1 of 1 corroborated by 2+ sources
HP(4)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Colobomatous optic disc macular atrophy chorioretinopathy syndrome Nanophthalmos
1 gene
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1 of 1 corroborated by 2+ sources
SIX6(4)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. Cluster 56 →
Cone-rod synaptic disorder Congenital stationary night blindness
1 gene
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1 of 1 corroborated by 2+ sources
CABP4(4)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Bilirubin metabolism disease Dihydropyrimidine metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
DPYS(4)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Developmental coordination disorder Discoid lupus erythematosus
1 gene
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OGG1(1)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Distal amyotrophy Myofibrillar myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYOT(3)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Dopamine beta-hydroxy­lase deficiency Paranoia
1 gene
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1 of 1 corroborated by 2+ sources
DBH(3)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Duane retraction syndrome Duane-radial ray syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SALL4(6)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Elsahy-waters syndrome Hereditary corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
ELOVL4(3)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Cardiofaciocutaneous syndrome Noonan syndrome-like disorder with loose anagen hair
1 gene
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1 of 1 corroborated by 2+ sources
SHOC2(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. Cluster 42 →
Ovarian dysgenesis Ovarian hyperstimulation syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FSHR(6)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. Cluster 38 →
Charcot-Marie-Tooth disease type 2 Congenital pes cavus
1 gene
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1 of 1 corroborated by 2+ sources
NEFL(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. Cluster 15 →
Cholecystitis Keppen-lubinsky syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ6(6)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Coats plus syndrome Lipoma
1 gene
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1 of 1 corroborated by 2+ sources
STN1(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Cobblestone lissencephaly Corneal disease
1 gene
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1 of 1 corroborated by 2+ sources
LAMB1(6)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. Cluster 222 →
Cobblestone lissencephaly Periventricular nodular heterotopia
1 gene
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1 of 1 corroborated by 2+ sources
TMTC3(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Cataract-glaucoma syndrome Stomach disease
1 gene
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1 of 1 corroborated by 2+ sources
TRPM3(3)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. Cluster 109 →
Autoimmune pancreatitis Stomach disease
1 gene
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0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Retinopathy-sensory neuropathy syndrome Short rib dysplasia-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FLVCR1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Satb2 associated syndrome Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
SATB2(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Myoclonic epilepsy self-limited familial neonatal epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
KCNQ3(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.