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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Leukodystrophy Leukoencephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
AARS1(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Cardiac arrest lissencephaly 10
1 gene
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1 of 1 corroborated by 2+ sources
CEP85L(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 4 →
Amino acid metabolism disorder lysinuric protein intolerance
1 gene
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1 of 1 corroborated by 2+ sources
SLC7A7(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 83 →
Dyskeratosis congenita MECOM-associated syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MECOM(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Hydrocephalus megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 3
1 gene
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1 of 1 corroborated by 2+ sources
CCND2(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Amino acid metabolism disorder methionine adenosyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MAT1A(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 83 →
Amino acid metabolism disorder methylmalonate semialdehyde dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ALDH6A1(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Congenital ocular coloboma microphthalmia, syndromic 12
1 gene
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1 of 1 corroborated by 2+ sources
RARB(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
multisystemic smooth muscle dysfunction syndrome Urethral obstruction
1 gene
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1 of 1 corroborated by 2+ sources
ACTA2(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Amino acid metabolism disorder Argininosuccinic aciduria
1 gene
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1 of 1 corroborated by 2+ sources
ASL(7)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
ATF6-related retinopathy Creutzfeldt-jakob disease
1 gene
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1 of 1 corroborated by 2+ sources
ATF6(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Anhedonia ATP1A3-associated neurological disorder
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A3(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Arthritis Autoinflammation and autoimmunity, systemic, with immune dysregulation 1
1 gene
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1 of 1 corroborated by 2+ sources
COPA(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
bardet-biedl syndrome 16 Cystic kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
SDCCAG8(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 8 →
Anhedonia Behavior disorders
1 gene
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SLC6A4(1)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 156 →
Beta-hexosaminidase a deficiency Leukodystrophy
1 gene
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HEXA(1)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Dyskinesia Periventricular heterotopia with microcephaly, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
ARFGEF2(5)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Hydrocephalus Periventricular heterotopia with microcephaly, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
ARFGEF2(4)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Dyskinesia Periventricular laminar heterotopia
1 gene
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1 of 1 corroborated by 2+ sources
ARFGEF2(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Hydrocephalus Periventricular laminar heterotopia
1 gene
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ARFGEF2(1)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Arthritis phelan-mcdermid syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SHANK3(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Language development disorders phelan-mcdermid syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SHANK3(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Amino acid metabolism disorder Phosphoserine phosphatase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PSPH(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Leukodystrophy POLR3A-related disorder
1 gene
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1 of 1 corroborated by 2+ sources
POLR3A(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Leukodystrophy POLR3B-related disorder
1 gene
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1 of 1 corroborated by 2+ sources
POLR3B(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.