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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Exostoses Seizures, scoliosis, and macrocephaly/microcephaly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EXT2(7)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 93 →
Exostoses exostoses, multiple, type 2
1 gene
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1 of 1 corroborated by 2+ sources
EXT2(5)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 93 →
Exostoses exostoses, multiple, type 1
1 gene
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1 of 1 corroborated by 2+ sources
EXT1(6)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
focal segmental glomerulosclerosis 3, susceptibility to Idiopathic steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CD2AP(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
focal segmental glomerulosclerosis 9 Idiopathic steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CRB2(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
fragile x syndrome Gonadal dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
FMR1(3)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
fraser syndrome 3 Lymphoid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
GRIP1(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Gaucher disease-ophthalmoplegia-cardiovascular calcification syndrome Hereditary parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
GBA1(5)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Genetic lipodystrophy Leber hereditary optic neuropathy
1 gene
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EPHX1(1)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Genetic renal tubular disease Lymphoid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A3(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Growth restriction, hypoplastic kidneys, alopecia, and distinctive facies Hypertriglyceridemia
1 gene
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1 of 1 corroborated by 2+ sources
ZPR1(4)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 254 →
Diverticulitis Retinitis pigmentosa with or without skeletal anomalies
1 gene
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1 of 1 corroborated by 2+ sources
CWC27(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 373 →
Leber hereditary optic neuropathy RP1-related dominant retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RP1(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Leber hereditary optic neuropathy RP1-related recessive retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RP1(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Internet addiction disorder Separation anxiety disorder
1 gene
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1 of 1 corroborated by 2+ sources
DRD4(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
SNRNP200-related dominant retinopathy Stargardt disease
1 gene
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1 of 1 corroborated by 2+ sources
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 7 →
Hereditary parkinson disease spinocerebellar ataxia type 2
1 gene
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1 of 1 corroborated by 2+ sources
ATXN2(4)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Mastocytosis sulfite oxidase deficiency due to molybdenum cofactor deficiency type A
1 gene
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1 of 1 corroborated by 2+ sources
MOCS1(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Guanidinoacetate methyltransferase deficiency Hereditary parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
GAMT(3)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Hepatic lipase deficiency Lymphoid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
LIPC(4)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
hereditary spherocytosis Internet addiction disorder
1 gene
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1 of 1 corroborated by 2+ sources
ANK1(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Gonadal dysgenesis Hydrops with lactic acidosis and sideroblastic anemia
1 gene
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1 of 1 corroborated by 2+ sources
LARS2(5)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Hyperthermia Sickle cell anemia
1 gene
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1 of 1 corroborated by 2+ sources
GPX1(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Hypokalemia-hypomagnesemia Lymphoid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A3(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Hereditary parkinson disease Parkinson-dementia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MAPT(5)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.