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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Mucosulfatidosis Spondylosis
1 gene
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1 of 1 corroborated by 2+ sources
SUMF1(3)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Axonal hereditary motor and sensory neuropathy Multiple system atrophy
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 207 →
multiple symmetric lipomatosis with partial lipodystrophy Multiple system atrophy
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 207 →
Charcot-Marie-Tooth disease type 2A2 Multiple system atrophy
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 207 →
Multiple system atrophy nail-patella syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LMX1B(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Appendicitis Arthrogryposis, cleft palate, craniosynostosis, and impaired intellectual development
1 gene
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1 of 1 corroborated by 2+ sources
PPP3CA(4)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Autosomal recessive hypomyelinating leukodystrophy Hypomyelinating leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
HIKESHI(7)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Beta-ureidopropionase deficiency West syndrome
1 gene
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1 of 1 corroborated by 2+ sources
UPB1(6)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 328 →
Comp-related skeletal dysplasia Congenital cartilage disorder
1 gene
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1 of 1 corroborated by 2+ sources
COMP(3)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Compton-north congenital myopathy Spondylosis
1 gene
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1 of 1 corroborated by 2+ sources
CNTN1(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Cerebellar atrophy Congenital cerebellar hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
OXR1(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 239 →
congenital disorder of glycosylation, type iit Lipoprotein lipase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GALNT2(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 254 →
Congenital lethal myopathy Spondylosis
1 gene
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1 of 1 corroborated by 2+ sources
CNTN1(3)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Bone dysplasia with increased bone density Congenital cartilage disorder
1 gene
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SOST(1)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Camptodactyly Esophageal disease
1 gene
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1 of 1 corroborated by 2+ sources
TLN2(3)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Appendicitis periventricular nodular heterotopia 7
1 gene
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1 of 1 corroborated by 2+ sources
NEDD4L(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Hypomyelinating leukodystrophy POLR1C-related disorder
1 gene
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1 of 1 corroborated by 2+ sources
POLR1C(6)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Hypomyelinating leukodystrophy POLR3A-related disorder
1 gene
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1 of 1 corroborated by 2+ sources
POLR3A(5)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Congenital nasopharyngeal atresia primary ciliary dyskinesia 1
1 gene
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1 of 1 corroborated by 2+ sources
DNAI1(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 9 →
Congenital nasopharyngeal atresia primary ciliary dyskinesia 10
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF2(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 9 →
Congenital nasopharyngeal atresia primary ciliary dyskinesia 11
1 gene
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1 of 1 corroborated by 2+ sources
RSPH4A(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 9 →
Congenital nasopharyngeal atresia primary ciliary dyskinesia 12
1 gene
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1 of 1 corroborated by 2+ sources
RSPH9(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 9 →
Congenital nasopharyngeal atresia primary ciliary dyskinesia 13
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF1(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Congenital nasopharyngeal atresia primary ciliary dyskinesia 14
1 gene
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1 of 1 corroborated by 2+ sources
CCDC39(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Congenital nasopharyngeal atresia primary ciliary dyskinesia 15
1 gene
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1 of 1 corroborated by 2+ sources
CCDC40(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 9 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.