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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
HMGB1-related brachyphalangy, polydactyly and tibial aplasia syndrome Sepsis
1 gene
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1 of 1 corroborated by 2+ sources
HMGB1(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Growth hormone deficiency hypogonadotropic hypogonadism 1 with or without anosmia
1 gene
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1 of 1 corroborated by 2+ sources
ANOS1(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
hypogonadotropic hypogonadism 1 with or without anosmia Pituitary short stature
1 gene
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1 of 1 corroborated by 2+ sources
ANOS1(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
hypogonadotropic hypogonadism 1 with or without anosmia Sheehan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANOS1(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Growth hormone deficiency hypogonadotropic hypogonadism 3 with or without anosmia
1 gene
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1 of 1 corroborated by 2+ sources
PROKR2(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
hypogonadotropic hypogonadism 3 with or without anosmia Pituitary short stature
1 gene
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1 of 1 corroborated by 2+ sources
PROKR2(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Growth hormone deficiency hypogonadotropic hypogonadism 4 with or without anosmia
1 gene
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1 of 1 corroborated by 2+ sources
PROK2(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 54 →
hypogonadotropic hypogonadism 4 with or without anosmia Pituitary short stature
1 gene
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1 of 1 corroborated by 2+ sources
PROK2(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 54 →
hypogonadotropic hypogonadism 4 with or without anosmia Sheehan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PROK2(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 54 →
Lymphocytic b-cell leukemia Sebaceous gland neoplasms
1 gene
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LEF1(1)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Growth hormone deficiency TCF12-related craniosynostosis
1 gene
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1 of 1 corroborated by 2+ sources
TCF12(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Pituitary short stature TCF12-related craniosynostosis
1 gene
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1 of 1 corroborated by 2+ sources
TCF12(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Autoinflammation, antibody deficiency, and immune dysregulation Lymphocytic b-cell leukemia
1 gene
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1 of 1 corroborated by 2+ sources
PLCG2(5)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Avellino corneal dystrophy Sepsis
1 gene
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1 of 1 corroborated by 2+ sources
TGFBI(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
bamforth-lazarus syndrome Thyroid cancer
1 gene
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1 of 1 corroborated by 2+ sources
FOXE1(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
bardet-biedl syndrome 16 Schizoaffective disorder
1 gene
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1 of 1 corroborated by 2+ sources
SDCCAG8(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Brachyphalangy polydactyly tibial aplasia hypoplasia syndrome Sepsis
1 gene
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1 of 1 corroborated by 2+ sources
HMGB1(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Brunet-wagner neurodevelopmental syndrome Lymphocytic b-cell leukemia
1 gene
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1 of 1 corroborated by 2+ sources
RBL2(5)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Brunner syndrome Panic disorder
1 gene
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1 of 1 corroborated by 2+ sources
MAOA(5)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Bruton type agammaglobulinemia Growth hormone deficiency
1 gene
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1 of 1 corroborated by 2+ sources
BTK(4)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Bruton type agammaglobulinemia Pituitary short stature
1 gene
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1 of 1 corroborated by 2+ sources
BTK(4)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Cardiac anomalies - developmental delay - facial dysmorphism syndrome Strabismus
1 gene
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1 of 1 corroborated by 2+ sources
MED13L(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
pediatric systemic lupus erythematosus Schizoaffective disorder
1 gene
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1 of 1 corroborated by 2+ sources
SAT1(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Panic disorder Pemphigus foliaceus
1 gene
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RAN(1)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 156 →
Genetic steroid-resistant nephrotic syndrome idiopathic multidrug-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DAAM2(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.