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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Degenerative disorder Pantothenate kinase-associated neurodegeneration
1 gene
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1 of 1 corroborated by 2+ sources
PANK2(4)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Colonic disease Hyperlipoproteinemia
1 gene
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GHR(1)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Nephronophthisis renal-hepatic-pancreatic dysplasia 2
1 gene
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1 of 1 corroborated by 2+ sources
NEK8(6)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Kidney neoplasms Roberts syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ESCO2(7)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Degenerative disorder Striatal neurodegeneration
1 gene
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1 of 1 corroborated by 2+ sources
PDE8B(4)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Myasthenic syndrome Systemic primary carnitine deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC22A5(4)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Argininosuccinic aciduria Myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ASL(7)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
bardet-biedl syndrome 16 Nephronophthisis
1 gene
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1 of 1 corroborated by 2+ sources
SDCCAG8(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 8 →
BBS9-related ciliopathy Nephronophthisis
1 gene
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1 of 1 corroborated by 2+ sources
BBS9(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Developmental delay with hypotonia, myopathy, and brain abnormalities Neuromuscular disease
1 gene
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1 of 1 corroborated by 2+ sources
GOLGA2(3)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 189 →
Diffuse gastric and lobular breast cancer syndrome Generalized anxiety disorder
1 gene
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1 of 1 corroborated by 2+ sources
CTNNA1(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
DPAGT1-congenital disorder of glycosylation Myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DPAGT1(4)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
CEP164-related ciliopathy Nephronophthisis
1 gene
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1 of 1 corroborated by 2+ sources
CEP164(5)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 8 →
Cervicitis Kidney neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
IL32(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Charcot-Marie-tooth disease, axonal, type 2DD Neuromuscular disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A1(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Cleft lip/palate with abnormal thumbs and microcephaly Kidney neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ESCO2(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Congenital disorder of glycosylation Intellectual developmental disorder, x-linked
4 genes
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4 of 4 corroborated by 2+ sources
ALG13(2), MAGT1(4), ATP6AP1(3), ATP6AP2(5)
0.022 0.045 2.58e-3 3.51e-3 ✓ sig. —
Congenital cataract hypertrophic cardiomyopathy mitochondrial myopathy syndrome Progressive external ophthalmoplegia
1 gene
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1 of 1 corroborated by 2+ sources
SLC25A4(3)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. —
Hyperalphalipoproteinemia Malunion fracture
1 gene
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1 of 1 corroborated by 2+ sources
SCARB1(2)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. —
Hypotonia-cystinuria syndrome Motor skills disorder
1 gene
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1 of 1 corroborated by 2+ sources
CAMKMT(3)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. —
Bladder disease Pruritus
1 gene
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1 of 1 corroborated by 2+ sources
HRH1(2)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. —
Congenital respiratory system anomaly Thyroid gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
PDGFRA(2)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. —
Raynaud disease Urethral disease
1 gene
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ZFHX3(1)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. —
Leukocyte adhesion deficiency Platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
FERMT3(7)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. —
Mitochondrial encephalopathy Neuropathy, ataxia, and retinitis pigmentosa
1 gene
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COX3(1)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. Cluster 32 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.