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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
combined immunodeficiency due to GINS1 deficiency Prostate cancer
1 gene
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1 of 1 corroborated by 2+ sources
GINS1(2)
0.001 1.000 6.24e-2 6.39e-2 —
Osteocraniostenosis Prostate cancer
1 gene
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1 of 1 corroborated by 2+ sources
FAM111A(4)
0.001 1.000 6.24e-2 6.39e-2 —
FAM111A-related skeletal dysplasia Prostate cancer
1 gene
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1 of 1 corroborated by 2+ sources
FAM111A(2)
0.001 1.000 6.24e-2 6.39e-2 —
3-hydroxyisobutyric aciduria Prostate cancer
1 gene
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1 of 1 corroborated by 2+ sources
HIBADH(3)
0.001 1.000 6.24e-2 6.39e-2 —
dyskeratosis congenita and related telomere biology disorder Prostate cancer
1 gene
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1 of 1 corroborated by 2+ sources
RPA1(2)
0.001 1.000 6.24e-2 6.39e-2 —
DPM3-congenital disorder of glycosylation Prostate cancer
1 gene
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1 of 1 corroborated by 2+ sources
DPM3(2)
0.001 1.000 6.24e-2 6.39e-2 —
leukodystrophy, hypomyelinating, 18 Prostate cancer
1 gene
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1 of 1 corroborated by 2+ sources
DEGS1(2)
0.001 1.000 6.24e-2 6.39e-2 —
leukodystrophy, hypomyelinating, 22 Prostate cancer
1 gene
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1 of 1 corroborated by 2+ sources
CLDN11(2)
0.001 1.000 6.24e-2 6.39e-2 —
Prostate cancer RAD51D-related cancer predisposition
1 gene
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1 of 1 corroborated by 2+ sources
RAD51D(2)
0.001 1.000 6.24e-2 6.39e-2 —
platelet-type bleeding disorder 20 Prostate cancer
1 gene
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1 of 1 corroborated by 2+ sources
SLFN14(2)
0.001 1.000 6.24e-2 6.39e-2 —
kidney disorder Prostate cancer
1 gene
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1 of 1 corroborated by 2+ sources
SLC41A1(2)
0.001 1.000 6.24e-2 6.39e-2 —
inherited blood coagulation disorder Prostate cancer
1 gene
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1 of 1 corroborated by 2+ sources
APOLD1(2)
0.001 1.000 6.24e-2 6.39e-2 —
bleeding disorder, platelet-type, 22 Prostate cancer
1 gene
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1 of 1 corroborated by 2+ sources
EPHB2(4)
0.001 1.000 6.24e-2 6.39e-2 —
Diabetes mellitus type 1 Intellectual developmental disorder speech peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
NEMF(5)
0.002 0.500 6.10e-2 6.25e-2 —
Intellectual disability with craniofacial dysmorphism and macrocephaly Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
H1-4(2)
0.001 1.000 6.09e-2 6.25e-2 —
Intellectual developmental disorder seizures polymicrogyria Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
TCP1(4)
0.001 1.000 6.09e-2 6.25e-2 —
Intellectual developmental disorder seizures epilepsy Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
AP2M1(4)
0.001 1.000 6.09e-2 6.25e-2 —
Intellectual developmental disorder dysmorphic strabismus Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
ADAT3(5)
0.001 1.000 6.09e-2 6.25e-2 —
kaya-barakat-masson syndrome Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
YIF1B(2)
0.001 1.000 6.09e-2 6.25e-2 Cluster 6 →
El-hayek-chahrour neurodevelopmental syndrome Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
KDM5A(4)
0.001 1.000 6.09e-2 6.25e-2 —
Developmental delay with dysmorphic facies and brain anomalies Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
U2AF2(4)
0.001 1.000 6.09e-2 6.25e-2 —
Developmental delay with overweight and facial dysmorphism Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
SRRM2(2)
0.001 1.000 6.09e-2 6.25e-2 —
Developmental delay with variable neurological abnormalities Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
LMBRD2(5)
0.001 1.000 6.09e-2 6.25e-2 —
Early-onset epilepsy-intellectual disability-brain anomalies syndrome Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
PIGG(4)
0.001 1.000 6.09e-2 6.25e-2 —
Dworschak-punetha neurodevelopmental syndrome Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLXNA1(5)
0.001 1.000 6.09e-2 6.25e-2 Cluster 6 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.