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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
ciliary dyskinesia, primary, 40 Non-immune hydrops fetalis
1 gene
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1 of 1 corroborated by 2+ sources
DNAH9(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
platelet-type bleeding disorder 8 Thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
P2RY12(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
platelet-type von Willebrand disease Thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
GP1BA(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
protein S deficiency Thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
PROS1(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Pulmonary arterial hypertension pulmonary veno-occlusive disease and/or pulmonary capillary haemangiomatosis
1 gene
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1 of 1 corroborated by 2+ sources
EIF2AK4(4)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Combined deficiency of sialidase and beta galactosidase Non-immune hydrops fetalis
1 gene
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1 of 1 corroborated by 2+ sources
CTSA(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Compton-north congenital myopathy Congenital myopathy
1 gene
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1 of 1 corroborated by 2+ sources
CNTN1(3)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Congenital factor x deficiency Thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
F10(4)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
congenital heart defects, multiple types, 7 Non-immune hydrops fetalis
1 gene
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1 of 1 corroborated by 2+ sources
FLT4(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Congenital hypoplasia of penis Pulmonary arterial hypertension
1 gene
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PHF6(1)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Congenital lethal myopathy Congenital myopathy
1 gene
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1 of 1 corroborated by 2+ sources
CNTN1(3)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Congenital malrotation of intestine Non-immune hydrops fetalis
1 gene
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GALNT14(1)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. Cluster 42 →
Congenital methemoglobinemia Congenital myopathy
1 gene
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CYB5R3(1)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Auriculocondylar syndrome Cardiovascular abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
EDN1(7)
0.067 0.250 2.85e-3 3.81e-3 ✓ sig. —
Hyperemesis gravidarum Sideroblastic anemia
1 gene
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1 of 1 corroborated by 2+ sources
GDF15(4)
0.067 0.250 2.85e-3 3.81e-3 ✓ sig. —
Testicular hydrocele Testotoxicosis
1 gene
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1 of 1 corroborated by 2+ sources
INHBB(3)
0.067 0.250 2.85e-3 3.81e-3 ✓ sig. —
Demyelinating diseases Wallerian degeneration
1 gene
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1 of 1 corroborated by 2+ sources
SIRT1(2)
0.067 0.250 2.85e-3 3.81e-3 ✓ sig. —
Central serous retinopathy Developmental delay with impaired growth and dysmorphic facies
1 gene
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1 of 1 corroborated by 2+ sources
ARFGEF1(5)
0.067 0.250 2.85e-3 3.81e-3 ✓ sig. —
Cardiovascular abnormalities Primary graft dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
GATA2(2)
0.067 0.250 2.85e-3 3.81e-3 ✓ sig. Cluster 136 →
Sarcopenia Xeroderma
1 gene
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1 of 1 corroborated by 2+ sources
SUPV3L1(2)
0.067 0.250 2.85e-3 3.81e-3 ✓ sig. —
Knobloch syndrome Transposition of the great arteries
1 gene
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SLC19A1(1)
0.067 0.250 2.85e-3 3.81e-3 ✓ sig. Cluster 113 →
Chromosomal disorder Silver-russell syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GRB10(2)
0.067 0.250 2.85e-3 3.81e-3 ✓ sig. Cluster 199 →
Ataxia telangiectasia Chromosome 2q37 deletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HDAC4(4)
0.067 0.250 2.85e-3 3.81e-3 ✓ sig. —
Keratitis Thyroid hormone resistance
1 gene
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1 of 1 corroborated by 2+ sources
TRHR(3)
0.042 0.500 2.86e-3 3.81e-3 ✓ sig. —
Severe congenital neutropenia Whim syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CXCR2(6)
0.042 0.500 2.86e-3 3.81e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.