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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Curry-hall syndrome Short rib dysplasia-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EVC2(2)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Central nervous system malformation Progressive myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
LMNB2(5)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Chromosome 2q32-q33 deletion syndrome Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
SATB2(3)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Ovarian hyperstimulation syndrome Transient ischemic attack
1 gene
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0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Vulto-van silfhout-de vries syndrome Williams syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DLG4(2)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. Cluster 60 →
Hyperaldosteronism Intellectual developmental disorder seizures extrapyramidal
1 gene
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1 of 1 corroborated by 2+ sources
SATB1(2)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Lafora disease Progressive myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
NHLRC1(4)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. Cluster 329 →
Cardiac, facial, and digital anomalies with developmental delay Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
MEIS2(3)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Blood coagulation disorder Peeling skin syndrome with leukonychia and acral punctate keratoses
1 gene
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1 of 1 corroborated by 2+ sources
CAST(7)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Periventricular leukomalacia Uterine polyp
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHG1(2)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Peroxisome biogenesis disorder Refsum disease
1 gene
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1 of 1 corroborated by 2+ sources
PEX7(6)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Angiocentric glioma Deficiency anemia
1 gene
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1 of 1 corroborated by 2+ sources
MYB(2)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
ALG9-associated autosomal dominant polycystic kidney disease Polycystic kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
ALG9(6)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. Cluster 23 →
nephronophthisis 16 Polycystic kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
ANKS6(3)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Neural tube defect neurodegenerative syndrome due to cerebral folate transport deficiency
1 gene
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1 of 1 corroborated by 2+ sources
FOLR1(3)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Diabetic eye disease lissencephaly spectrum disorder with complex brainstem malformation
1 gene
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1 of 1 corroborated by 2+ sources
MACF1(2)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. Cluster 73 →
Diabetic eye disease Male infertility motility disorder
1 gene
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1 of 1 corroborated by 2+ sources
CCDC146(2)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
MKKS-related ciliopathy Polycystic kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
MKKS(2)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Polycystic kidney disease renal dysplasia, cystic, susceptibility to
1 gene
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1 of 1 corroborated by 2+ sources
BICC1(2)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Genetic predisposition to disease renal hypomagnesemia 4
1 gene
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1 of 1 corroborated by 2+ sources
EGF(2)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Polycystic kidney disease renal-hepatic-pancreatic dysplasia 2
1 gene
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1 of 1 corroborated by 2+ sources
NEK8(7)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Diabetic eye disease hereditary spherocytosis
1 gene
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1 of 1 corroborated by 2+ sources
ANK1(2)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Polycystic kidney disease polycystic kidney disease 3 with or without polycystic liver disease
1 gene
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1 of 1 corroborated by 2+ sources
GANAB(7)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. Cluster 23 →
Polycystic kidney disease polycystic liver disease 1
1 gene
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1 of 1 corroborated by 2+ sources
PRKCSH(3)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. Cluster 23 →
Polycystic kidney disease polycystic liver disease 2
1 gene
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1 of 1 corroborated by 2+ sources
SEC63(3)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. Cluster 23 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.