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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
immunodeficiency, common variable, 14 Promyelocytic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
IRF2BP2(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. Cluster 53 →
Arthrogryposis with ectodermal dysplasia Hereditary hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
OTOF(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Autoinflammation, immunodeficiency, and neutrophil dysfunction syndrome Promyelocytic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
CEBPE(3)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
autosomal recessive nonsyndromic hearing loss 63 Hereditary hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
LRTOMT(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. Cluster 26 →
Hereditary hearing loss Peripheral neuropathy myopathy hoarseness hearing loss syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH14(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Hereditary hearing loss Peripheral neuropathy, myopathy, hoarseness, and hearing
1 gene
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1 of 1 corroborated by 2+ sources
MYH14(4)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Hereditary hearing loss progressive microcephaly-seizures-cortical blindness-developmental delay syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DIAPH1(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Hearing loss with hypertrophic cardiomyopathy Hereditary hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
MYO6(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Cardiac embolism hereditary spherocytosis
1 gene
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1 of 1 corroborated by 2+ sources
ANK1(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
congenital myasthenic syndrome 12 Small vessel stroke
1 gene
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1 of 1 corroborated by 2+ sources
GFPT1(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Cardiac embolism Retrognathia
1 gene
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1 of 1 corroborated by 2+ sources
PRRX1(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Hereditary hearing loss Sensorineural deafness with dilated cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
EYA4(3)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Hereditary hearing loss Sensorineural hearing loss thrombocytopenia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DIAPH1(4)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Small vessel stroke spinocerebellar ataxia, autosomal recessive 31
1 gene
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1 of 1 corroborated by 2+ sources
ATG7(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. Cluster 403 →
Promyelocytic leukemia Spontaneous coronary artery dissection
1 gene
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1 of 1 corroborated by 2+ sources
F3(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
leukemia, acute myeloid, susceptibility to Promyelocytic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
FLT3(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Lissencephaly lissencephaly 10
1 gene
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1 of 1 corroborated by 2+ sources
CEP85L(5)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Lissencephaly lissencephaly spectrum disorder with complex brainstem malformation
1 gene
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1 of 1 corroborated by 2+ sources
MACF1(5)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
dilated cardiomyopathy 1J Hereditary hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
EYA4(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Cardiac embolism Dysgnathia complex
1 gene
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1 of 1 corroborated by 2+ sources
PRRX1(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
FOXG1 disorder Lissencephaly
1 gene
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1 of 1 corroborated by 2+ sources
FOXG1(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
gapo syndrome Small vessel stroke
1 gene
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1 of 1 corroborated by 2+ sources
ANTXR1(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Growth retardation, alopecia, pseudoanodontia and optic atrophy Small vessel stroke
1 gene
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1 of 1 corroborated by 2+ sources
ANTXR1(3)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Lymphoblastic leukemia Skeletal dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
TP63(2), CSGALNACT1(4)
0.025 0.087 3.24e-3 4.24e-3 ✓ sig. —
Hypomaturation amelogenesis imperfecta Skin hair eye pigmentation variation
1 gene
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1 of 1 corroborated by 2+ sources
SLC24A4(2)
0.071 0.143 3.18e-3 4.17e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.