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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Aortic stenosis intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephaly
1 gene
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1 of 1 corroborated by 2+ sources
PIDD1(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
B-cell acute lymphoblastic leukemia Intracranial germ cell tumor
1 gene
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BAK1(1)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Intracranial germ cell tumor Testicular carcinoma
1 gene
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BAK1(1)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
khan-khan-katsanis syndrome Testicular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
NCAPG2(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
khan-khan-katsanis syndrome Testicular germ cell tumor
1 gene
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1 of 1 corroborated by 2+ sources
NCAPG2(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Congenital cataract nance-horan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NHS(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. Cluster 43 →
Congenital cataract Oculocerebrorenal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
OCRL(5)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Cleft palate periventricular nodular heterotopia 7
1 gene
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1 of 1 corroborated by 2+ sources
NEDD4L(3)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
B-cell acute lymphoblastic leukemia Primary angle-closure glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
SPATA13(4)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
B-cell acute lymphoblastic leukemia pyruvate dehydrogenase E3 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DLD(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Frontotemporal dementia frontotemporal dementia and/or amyotrophic lateral sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
GRN(4)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. Cluster 102 →
Frontotemporal dementia frontotemporal dementia and/or amyotrophic lateral sclerosis 5
1 gene
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1 of 1 corroborated by 2+ sources
CCNF(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. Cluster 102 →
Frontotemporal dementia frontotemporal dementia and/or amyotrophic lateral sclerosis 7
1 gene
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1 of 1 corroborated by 2+ sources
CHMP2B(3)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. Cluster 102 →
Frontotemporal dementia glaucoma, normal tension, susceptibility to
1 gene
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1 of 1 corroborated by 2+ sources
OPTN(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
B-cell acute lymphoblastic leukemia Glutaminase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GLS(4)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
glutaric acidemia type 3 Testicular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SUGCT(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
glutaric acidemia type 3 Testicular germ cell tumor
1 gene
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1 of 1 corroborated by 2+ sources
SUGCT(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
B-cell acute lymphoblastic leukemia granulocytopenia with immunoglobulin abnormality
1 gene
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1 of 1 corroborated by 2+ sources
HYOU1(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. Cluster 3 →
Aortic stenosis Uterine benign neoplasm
1 gene
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BET1L(1)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Cleft palate X-linked cleft palate and ankloglossia
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Congenital cataract Congenital cataract severe neonatal hepatopathy developmental delay syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CYP51A1(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. Cluster 43 →
Aortic stenosis Congenital hypogonadotropic hypogonadism
1 gene
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1 of 1 corroborated by 2+ sources
EMX2(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Congenital malrotation of intestine Oropharyngeal cancer
1 gene
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1 of 1 corroborated by 2+ sources
GALNT14(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Cleft palate renal hypomagnesemia 4
1 gene
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1 of 1 corroborated by 2+ sources
EGF(3)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Aortic stenosis Short stature spectrum
1 gene
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1 of 1 corroborated by 2+ sources
ACAN(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.