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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Aortic aneurysm Bladder dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA3(3)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Aortic aneurysm neonatal/infantile epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNH5(2)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. Cluster 12 →
Ocular anomalies with axonal neuropathy and developmental delay Pontocerebellar hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
ATAD3A(5)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Distal spinal muscular atrophy Odontochondrodysplasia 2 with hearing loss and diabetes
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHG5(3)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Auditory neuropathy Auditory neuropathy with optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
FDXR(5)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Bifid uvula Neural tube defects, x-linked
1 gene
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GRHL3(1)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Bilateral generalized polymicrogyria Congenital microcephaly
1 gene
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1 of 1 corroborated by 2+ sources
RTTN(2)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Auditory neuropathy Intellectual disability with craniofacial anomalies and cardiac defects
1 gene
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H1-4(1)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Agenesis of corpus callosum Auditory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
CDH2(3)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Cerebral folate deficiency Neural tube defects, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
FOLR1(2)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Auditory neuropathy Charcot-Marie-Tooth disease type 2
1 gene
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1 of 1 corroborated by 2+ sources
NEFL(2)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 2 Distal spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
NEFL(2)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. Cluster 15 →
Cochlear diseases Congenital ear anomaly
1 gene
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1 of 1 corroborated by 2+ sources
PCDH15(2)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Camptodactyly-arthropathy-coxa vara-pericarditis syndrome Hyperplasia
1 gene
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1 of 1 corroborated by 2+ sources
PRG4(6)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Microscopic colitis Selective iga deficiency disease
1 gene
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CLEC16A(1)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. Cluster 360 →
Pontocerebellar hypoplasia propionic acidemia
1 gene
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1 of 1 corroborated by 2+ sources
PCCA(2)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Seborrhea-like dermatitis with psoriasiform elements Seborrheic keratosis
1 gene
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1 of 1 corroborated by 2+ sources
TBCD(2)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Congenital microcephaly Skraban-deardorff syndrome
1 gene
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WDR62(1)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Distal spinal muscular atrophy Testis atrophy
1 gene
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PLEKHG5(1)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Pituitary stalk interruption syndrome Uinary system neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
WDR11(2)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Selective iga deficiency disease Vitreous body disease
1 gene
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NCKAP5(1)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Diffuse panbronchiolitis Membranous glomerulonephritis
1 gene
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1 of 1 corroborated by 2+ sources
MUCL3(4)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Discoid lupus erythematosus Hyperplasia
1 gene
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1 of 1 corroborated by 2+ sources
OGG1(2)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
developmental and epileptic encephalopathy, 41 Myositis
1 gene
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1 of 1 corroborated by 2+ sources
SLC1A2(2)
0.016 1.000 3.96e-3 5.02e-3 ✓ sig. Cluster 25 →
dilated cardiomyopathy 1V Huntington disease
1 gene
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1 of 1 corroborated by 2+ sources
PSEN2(2)
0.016 1.000 3.96e-3 5.02e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.