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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Say meyer syndrome X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
HUWE1(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy short-rib thoracic dysplasia 19 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
IFT81(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
syndromic X-linked intellectual disability Nascimento type X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
UBE2A(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 115 →
syndromic X-linked intellectual disability Raymond type X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
ZDHHC9(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 115 →
syndromic X-linked intellectual disability Siderius type X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
PHF8(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 115 →
syndromic X-linked intellectual disability Snyder type X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
SMS(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Allergic contact dermatitis systemic lupus erythematosus 17
1 gene
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1 of 1 corroborated by 2+ sources
TLR7(3)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. Cluster 16 →
Psoriatic arthritis Systemic primary carnitine deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC22A5(4)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Allergic contact dermatitis immunodeficiency 19
1 gene
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1 of 1 corroborated by 2+ sources
CD3D(3)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Intellectual developmental disorder language neurodegenerative Psoriatic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
NR4A2(5)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Allergic contact dermatitis Papillon-lefevre syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CTSC(6)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Allergic contact dermatitis pediatric systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
SAT1(3)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Allergic contact dermatitis thrombocytopenia 3
1 gene
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1 of 1 corroborated by 2+ sources
FYB1(3)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Congenital factor x deficiency Psoriatic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
F10(4)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Allergic contact dermatitis Cervicitis
1 gene
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1 of 1 corroborated by 2+ sources
IL32(2)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Carnitine deficiency Psoriatic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
SLC22A5(3)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Allergic contact dermatitis Congenital small-platelet thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
FYB1(3)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Factor x deficiency Psoriatic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
F10(4)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Allergic contact dermatitis Familial partial lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CIDEC(5)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Gestational trophoblastic disease Psoriatic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
POU5F1(2)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
autosomal dominant nonsyndromic hearing loss Machado-joseph disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP11A(2)
0.059 0.125 4.67e-3 5.79e-3 ✓ sig. —
Male infertility large polyploid spermatozoa Spermatogenic failure, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
CFAP47(6)
0.059 0.125 4.67e-3 5.79e-3 ✓ sig. —
Pernicious anemia Splenic disease
1 gene
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CNTN5(1)
0.059 0.125 4.67e-3 5.79e-3 ✓ sig. —
Complex regional pain syndrome Nocturnal frontal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SPAG1(2)
0.059 0.125 4.67e-3 5.79e-3 ✓ sig. —
Body mass index Venous insufficiency
1 gene
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1 of 1 corroborated by 2+ sources
FTO(3)
0.059 0.125 4.67e-3 5.79e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.