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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Common variable immunodeficiency immunodeficiency, common variable, 3
1 gene
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1 of 1 corroborated by 2+ sources
CD19(5)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. —
Common variable immunodeficiency immunodeficiency, common variable, 4
1 gene
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1 of 1 corroborated by 2+ sources
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. Cluster 39 →
Common variable immunodeficiency immunodeficiency, common variable, 5
1 gene
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1 of 1 corroborated by 2+ sources
MS4A1(4)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. —
Common variable immunodeficiency immunodeficiency, common variable, 6
1 gene
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1 of 1 corroborated by 2+ sources
CD81(5)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. Cluster 39 →
Common variable immunodeficiency immunodeficiency, common variable, 7
1 gene
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1 of 1 corroborated by 2+ sources
CR2(5)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. Cluster 39 →
Contact dermatitis inherited glutathione synthetase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GSS(3)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. —
Common variable immunodeficiency isolated sulfite oxidase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SUOX(2)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. Cluster 39 →
Iminoglycinuria Macular telangiectasia
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A20(4)
0.050 0.200 4.86e-3 5.99e-3 ✓ sig. —
Oculopharyngodistal myopathy Tremor
1 gene
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1 of 1 corroborated by 2+ sources
0.050 0.200 4.86e-3 5.99e-3 ✓ sig. —
Diabetic foot Polymorphic catecholaminergic ventricular tachycardia
1 gene
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1 of 1 corroborated by 2+ sources
TRDN(2)
0.050 0.200 4.86e-3 5.99e-3 ✓ sig. —
Congenital heart malformation Syntelencephaly
1 gene
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1 of 1 corroborated by 2+ sources
FOXH1(3)
0.050 0.200 4.86e-3 5.99e-3 ✓ sig. Cluster 96 →
Congenital heart malformation Septopreoptic holoprosencephaly
1 gene
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1 of 1 corroborated by 2+ sources
FOXH1(3)
0.050 0.200 4.86e-3 5.99e-3 ✓ sig. Cluster 96 →
Paraplegia Rotator cuff tear
1 gene
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SAP30BP(1)
0.050 0.200 4.86e-3 5.99e-3 ✓ sig. —
Intellectual developmental disorder dysmorphic facial Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
SETD5(3)
0.036 0.333 4.86e-3 5.99e-3 ✓ sig. —
Amblyopia Thiamine-responsive maple syrup urine disease
1 gene
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1 of 1 corroborated by 2+ sources
BCKDHB(2)
0.036 0.333 4.86e-3 5.99e-3 ✓ sig. —
Encephalitis Spondyloepimetaphyseal dysplasia
1 gene
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ABCD1(1)
0.036 0.333 4.86e-3 5.99e-3 ✓ sig. —
Aplasia cutis congenita with epibulbar dermoids Oocyte maturation defect
1 gene
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1 of 1 corroborated by 2+ sources
NLRP5(4)
0.036 0.333 4.86e-3 5.99e-3 ✓ sig. —
Chagas cardiomyopathy Chudley-mccullough syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPTB(2)
0.036 0.333 4.86e-3 5.99e-3 ✓ sig. Cluster 400 →
Chagas cardiomyopathy Rotor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLCO1B1(4)
0.036 0.333 4.86e-3 5.99e-3 ✓ sig. —
Male infertility testicular dysgenesis Oocyte maturation defect
1 gene
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1 of 1 corroborated by 2+ sources
CHEK1(3)
0.036 0.333 4.86e-3 5.99e-3 ✓ sig. —
Microscopic colitis Toxic epidermal necrolysis
1 gene
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MICB(1)
0.026 0.500 4.80e-3 5.92e-3 ✓ sig. —
Spinal muscular atrophy Testis atrophy
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHG5(2)
0.026 0.500 4.80e-3 5.92e-3 ✓ sig. —
Autoinflammatory syndrome Candle syndrome
1 gene
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PSMB8(1)
0.026 0.500 4.80e-3 5.92e-3 ✓ sig. —
Sandhoff disease Spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
HEXB(7)
0.026 0.500 4.80e-3 5.92e-3 ✓ sig. —
Atypical femoral fracture Congenital radioulnar synostosis
1 gene
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1 of 1 corroborated by 2+ sources
SMAD6(2)
0.026 0.500 4.80e-3 5.92e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.