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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cortical dysplasia-focal epilepsy syndrome Idiopathic pulmonary fibrosis
1 gene
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1 of 1 corroborated by 2+ sources
CNTNAP2(4)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Bone disease Craniometadiaphyseal osteosclerosis with hip dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
AXIN1(4)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Arthrogryposis with ectodermal dysplasia nonsyndromic genetic hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
OTOF(2)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Braddock-carey syndrome Idiopathic pulmonary fibrosis
1 gene
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1 of 1 corroborated by 2+ sources
KIF15(4)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Catel-manzke syndrome Neurodegenerative disorder
1 gene
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1 of 1 corroborated by 2+ sources
KYNU(2)
0.023 0.500 5.32e-3 6.49e-3 ✓ sig. —
Masp2 deficiency Neurodegenerative disorder
1 gene
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1 of 1 corroborated by 2+ sources
TARDBP(2)
0.023 0.500 5.32e-3 6.49e-3 ✓ sig. —
Tooth agenesis X-linked hypohidrotic ectodermal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
EDA(7)
0.023 0.500 5.32e-3 6.49e-3 ✓ sig. —
Obstructive sleep apnea syndrome Tetany
1 gene
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1 of 1 corroborated by 2+ sources
CNNM2(2)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
Atrial flutter Trichomegaly
1 gene
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1 of 1 corroborated by 2+ sources
FGF5(5)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
Kidney cancer leukodystrophy, hypomyelinating, 25
1 gene
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1 of 1 corroborated by 2+ sources
TMEM163(2)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
Aortic valve disease lissencephaly 10
1 gene
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1 of 1 corroborated by 2+ sources
CEP85L(2)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
Camptodactyly Kidney cancer
1 gene
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1 of 1 corroborated by 2+ sources
TLN2(3)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
Neutropenia, nonimmune chronic idiopathic, adult Obstructive sleep apnea syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GFI1(4)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
Combined oxidative phosphorylation defect Obstructive sleep apnea syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WARS2(3)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
Aortic valve disease Congenital hypogonadotropic hypogonadism
1 gene
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1 of 1 corroborated by 2+ sources
EMX2(2)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
Aortic valve disease Short stature spectrum
1 gene
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1 of 1 corroborated by 2+ sources
ACAN(2)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
5-oxoprolinase deficiency Atrial flutter
1 gene
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OPLAH(1)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. Cluster 4 →
Aortic valve disease aortic valve disease 3
1 gene
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1 of 1 corroborated by 2+ sources
ROBO4(5)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
Obstructive sleep apnea syndrome Pelviscapular dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
TBX15(5)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
Obstructive sleep apnea syndrome primordial dwarfism-immunodeficiency-lipodystrophy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PRIM1(2)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
Atrial flutter Progressive myoclonic epilepsy with intracellular inclusions
1 gene
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1 of 1 corroborated by 2+ sources
PRDM8(3)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
hartnup disease Kidney cancer
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A19(2)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
hypomagnesemia, seizures, and intellectual disability 1 Obstructive sleep apnea syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CNNM2(2)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
Aortic valve disease Congenital progressive bone marrow failure-b-cell immunodeficiency-skeletal dysplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYSM1(3)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
Cousin syndrome Obstructive sleep apnea syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX15(3)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.