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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bilirubin metabolism disease Kleine-levin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRANK1(3)
0.053 0.143 5.44e-3 6.63e-3 ✓ sig. —
Adams-oliver syndrome Congenital hydrocephalus
1 gene
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1 of 1 corroborated by 2+ sources
DOCK6(3)
0.050 0.167 5.44e-3 6.63e-3 ✓ sig. —
Adams-oliver syndrome Bicuspid aortic valve
1 gene
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1 of 1 corroborated by 2+ sources
NOTCH1(4)
0.050 0.167 5.44e-3 6.63e-3 ✓ sig. —
Albinism Skin cancer
1 gene
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1 of 1 corroborated by 2+ sources
TPCN2(2)
0.012 1.000 5.39e-3 6.57e-3 ✓ sig. —
Age-related macular degeneration Cerebellar vermis atrophy
1 gene
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1 of 1 corroborated by 2+ sources
SYN3(2)
0.012 1.000 5.39e-3 6.57e-3 ✓ sig. —
Age-related macular degeneration neurodevelopmental disorder, nonprogressive, with spasticity and transient opisthotonus
1 gene
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1 of 1 corroborated by 2+ sources
TNR(2)
0.012 1.000 5.39e-3 6.57e-3 ✓ sig. —
Age-related macular degeneration Primary angle-closure glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
SPATA13(4)
0.012 1.000 5.39e-3 6.57e-3 ✓ sig. —
histidinemia Skin cancer
1 gene
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1 of 1 corroborated by 2+ sources
HAL(2)
0.012 1.000 5.39e-3 6.57e-3 ✓ sig. Cluster 29 →
Age-related macular degeneration Congenital adrenal hyperplasia due to 21-hydroxylase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYP21A2(5)
0.012 1.000 5.39e-3 6.57e-3 ✓ sig. —
Congenital ichthyosis with hypotrichosis syndrome Idiopathic pulmonary fibrosis
1 gene
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1 of 1 corroborated by 2+ sources
ST14(2)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
21q22.11q22.12 microdeletion syndrome Idiopathic pulmonary fibrosis
1 gene
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1 of 1 corroborated by 2+ sources
KIF15(3)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
nonsyndromic genetic hearing loss Sensorineural deafness with dilated cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
EYA4(3)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Bone disease spondyloepimetaphyseal dysplasia, genevieve type
1 gene
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1 of 1 corroborated by 2+ sources
NANS(2)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Bone disease Caudal duplication anomaly
1 gene
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1 of 1 corroborated by 2+ sources
AXIN1(6)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Bone disease Cerebrofaciothoracic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
TMCO1(3)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Bone disease Cerebrotendinous xanthomatosis
1 gene
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1 of 1 corroborated by 2+ sources
CYP27A1(5)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Bone disease Cholestanol storage disease
1 gene
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1 of 1 corroborated by 2+ sources
CYP27A1(2)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
dilated cardiomyopathy 1J nonsyndromic genetic hearing loss
1 gene
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EYA4(1)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
hearing impairment and infertile male syndrome nonsyndromic genetic hearing loss
1 gene
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CDC14A(1)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
nonsyndromic genetic hearing loss Peripheral neuropathy myopathy hoarseness hearing loss syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH14(2)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
nonsyndromic genetic hearing loss Peripheral neuropathy, myopathy, hoarseness, and hearing
1 gene
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1 of 1 corroborated by 2+ sources
MYH14(5)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Idiopathic pulmonary fibrosis interstitial lung disease 1
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA1(3)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Idiopathic pulmonary fibrosis interstitial lung disease 2
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA2(5)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Idiopathic pulmonary fibrosis isovaleric acidemia
1 gene
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1 of 1 corroborated by 2+ sources
IVD(2)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Bone disease frank-ter haar syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.