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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Brain aneurysm Cerebellar vermis atrophy
1 gene
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1 of 1 corroborated by 2+ sources
SYN3(2)
0.011 1.000 5.65e-3 6.86e-3 ✓ sig. —
Brain aneurysm Gaucher disease-ophthalmoplegia-cardiovascular calcification syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GBA1(4)
0.011 1.000 5.65e-3 6.86e-3 ✓ sig. —
Mitochondrial dna depletion syndrome Navajo neurohepatopathy
1 gene
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1 of 1 corroborated by 2+ sources
MPV17(5)
0.031 0.333 5.64e-3 6.85e-3 ✓ sig. —
Congenital myasthenic syndrome Cystine urolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
PREPL(2)
0.031 0.333 5.64e-3 6.85e-3 ✓ sig. —
Desbuquois dysplasia Duchenne muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
XYLT1(4)
0.031 0.333 5.64e-3 6.85e-3 ✓ sig. —
Fatty liver, alcoholic Urban-schosser-spohr syndrome
1 gene
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SREBF1(1)
0.011 1.000 5.59e-3 6.78e-3 ✓ sig. —
Fatty liver, alcoholic X-linked ichthyosis with steryl-sulfatase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
STS(2)
0.011 1.000 5.59e-3 6.78e-3 ✓ sig. —
Fatty liver, alcoholic long chain 3-hydroxyacyl-coa dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HADHA(2)
0.011 1.000 5.59e-3 6.78e-3 ✓ sig. —
Fatty liver, alcoholic mitochondrial trifunctional protein deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HADHB(2)
0.011 1.000 5.59e-3 6.78e-3 ✓ sig. —
Fatty liver, alcoholic Mucoepithelial dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SREBF1(2)
0.011 1.000 5.59e-3 6.78e-3 ✓ sig. —
Corticosteroid-binding globulin deficiency Fatty liver, alcoholic
1 gene
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1 of 1 corroborated by 2+ sources
0.011 1.000 5.59e-3 6.78e-3 ✓ sig. —
Abetalipoproteinemia Fatty liver, alcoholic
1 gene
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1 of 1 corroborated by 2+ sources
MTTP(2)
0.011 1.000 5.59e-3 6.78e-3 ✓ sig. —
Fatty liver, alcoholic Oxysterol accumulation disorder
1 gene
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1 of 1 corroborated by 2+ sources
CYP7B1(2)
0.011 1.000 5.59e-3 6.78e-3 ✓ sig. —
Nasopharyngeal neoplasms Polycystic lipomembranous osteodysplasia with sclerosing leukoencephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
TREM2(7)
0.022 0.500 5.58e-3 6.78e-3 ✓ sig. —
Marfan syndrome Progressive arterial occlusive disease with hypertension
1 gene
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1 of 1 corroborated by 2+ sources
YY1AP1(2)
0.022 0.500 5.58e-3 6.78e-3 ✓ sig. —
Hepatic veno occlusive disease with immunodeficiency Leukemia
1 gene
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1 of 1 corroborated by 2+ sources
SP140(2)
0.022 0.500 5.58e-3 6.78e-3 ✓ sig. —
Coffin-siris syndrome Upper extremity fracture
1 gene
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1 of 1 corroborated by 2+ sources
ARID1A(6)
0.045 0.200 5.51e-3 6.70e-3 ✓ sig. —
Cardiomegaly thrombocytopenia 6
1 gene
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1 of 1 corroborated by 2+ sources
SRC(2)
0.012 1.000 5.46e-3 6.63e-3 ✓ sig. —
Cardiomegaly HAND2 related congenital heart defect
1 gene
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1 of 1 corroborated by 2+ sources
HAND2(2)
0.012 1.000 5.46e-3 6.63e-3 ✓ sig. —
Anemia Hypochromic anemia
1 gene
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SLC11A2(1)
0.012 1.000 5.46e-3 6.63e-3 ✓ sig. —
Cerebrovascular disorder platelet-type bleeding disorder 8
1 gene
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1 of 1 corroborated by 2+ sources
P2RY12(2)
0.012 1.000 5.46e-3 6.63e-3 ✓ sig. —
Cardiomegaly PLD1-related congenital heart disease
1 gene
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1 of 1 corroborated by 2+ sources
PLD1(2)
0.012 1.000 5.46e-3 6.63e-3 ✓ sig. —
Cardiomegaly polyglucosan body myopathy 1 with or without immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
RBCK1(2)
0.012 1.000 5.46e-3 6.63e-3 ✓ sig. —
Cerebrovascular disorder PRPF8-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
PRPF8(2)
0.012 1.000 5.46e-3 6.63e-3 ✓ sig. —
Cardiomegaly immunodeficiency 97 with autoinflammation
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CG(2)
0.012 1.000 5.46e-3 6.63e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.